Commits · 7fe0baea0f3014354a30aa3b5c5f9db63ad32485 · Philippe Bardou / cnvpipelines

Sep 10, 2019
- Preparing for simulation work-flow. · 7fe0baea
  Thomas Faraut authored 5 years ago
  
  Remaining problem commes from reference sequence "reference.fasta" absent at the beginning of the workflow.
  7fe0baea
- all snakefiles for refactor · 8492f706
  Thomas Faraut authored 5 years ago
  
  8492f706
- restoring genome.fa.gz · 8d56ce38
  Thomas Faraut authored 5 years ago
  
  8d56ce38
- Pulled down update to submodule_dir · 9cdb9085
  Thomas Faraut authored 5 years ago
  
  9cdb9085
- new implementation · 869f27a0
  Thomas Faraut authored 5 years ago
  
  869f27a0
- clean unused files · 6b6b4d46
  Thomas Faraut authored 5 years ago
  
  6b6b4d46
- git ignores now directories names old · 7d8bb380
  Thomas Faraut authored 5 years ago
  
  7d8bb380
- refbundle.smk becomes master · 38306668
  Thomas Faraut authored 5 years ago
  
  38306668
- reorganization for refbundle · d909ccac
  Thomas Faraut authored 5 years ago
  
  d909ccac
- new organization for detection · fd13c354
  Thomas Faraut authored 5 years ago
  
  fd13c354
- SnekamakeCommand py --> smk · 965bcf00
  Thomas Faraut authored 5 years ago
  
  965bcf00
- new factorization · 652f0410
  Thomas Faraut authored 5 years ago and Thomas Faraut committed 5 years ago
  
  652f0410
- new factorization · 84ce3509
  Thomas Faraut authored 5 years ago and Thomas Faraut committed 5 years ago
  
  84ce3509
- new installation procedures · 6b92b17b
  Thomas Faraut authored 5 years ago
  
  6b92b17b
- Update README.md · 4eabe5e3
  Thomas Faraut authored 5 years ago
  
  4eabe5e3
- updating lib · 12e85039
  Thomas Faraut authored 5 years ago
  
  12e85039
- POLYMORPH becomes MONOMORH · 41801b24
  Thomas Faraut authored 5 years ago
  
  41801b24
Sep 06, 2019
- updating popsim · 854fe42f
  Thomas Faraut authored 5 years ago
  
  854fe42f
Sep 04, 2019
- updating popsim · 51097db5
  Thomas Faraut authored 5 years ago
  
  51097db5
- updating popsim in master · d092815d
  Thomas Faraut authored 5 years ago
  
  d092815d
Aug 28, 2019
- Update environment.yaml · 1cfcdc00
  Thomas Faraut authored 5 years ago
  
  1cfcdc00
Aug 27, 2019
- Update lumpysvtyperpy27.yaml · db75b30e
  Thomas Faraut authored 5 years ago
  
  db75b30e
- Update lumpysvtyperpy27.yaml · 04e39643
  Thomas Faraut authored 5 years ago
  
  04e39643
- Update environment.yaml · b7ce5f43
  Thomas Faraut authored 5 years ago
  
  b7ce5f43
- Update lumpysvtyperpy27.yaml · 914abc98
  Thomas Faraut authored 5 years ago
  
  914abc98
- Update lumpysvtyperpy27.yaml · eb46e8be
  Thomas Faraut authored 5 years ago
  
  eb46e8be
Aug 16, 2019
- updating popsim · 9649c1e9
  Thomas Faraut authored 5 years ago
  
  9649c1e9
Aug 14, 2019
- Update application.properties.example · f17040ee
  Thomas Faraut authored 5 years ago
  
  f17040ee
- Merge branch 'master' of forgemia.inra.fr:svdetection/cnvpipelines · 3f52f065
  Thomas Faraut authored 5 years ago
  
  3f52f065
- adding delly to conda · dea197d9
  Thomas Faraut authored 5 years ago
  
  dea197d9
- controlling for batch system to set SV_PARALLEL_DRMAA · 057893da
  Thomas Faraut authored 5 years ago
  
  057893da
- removing -t from delly filter for compatibility with new delly version · 83817698
  Thomas Faraut authored 5 years ago
  
  83817698
Jul 23, 2019
- updating popsim · 040085ab
  Thomas Faraut authored 5 years ago
  
  040085ab
- small modification to application.properties · 7b232e8a
  Thomas Faraut authored 5 years ago
  
  7b232e8a
- Update README.md · 0e4df6cb
  Thomas Faraut authored 5 years ago
  
  0e4df6cb
- Merge branch 'master' of forgemia.inra.fr:svdetection/cnvpipelines · e3d5a053
  Thomas Faraut authored 5 years ago
  
  e3d5a053
- Merge branch 'newinstall' to master in order to have a clean install · b67a30bd
  Thomas Faraut authored 5 years ago
  
  b67a30bd
- which compiler to use for pirs · 65fe4f95
  Thomas Faraut authored 5 years ago
  
  65fe4f95
- specifying a correct place for conda envs · 60588422
  Thomas Faraut authored 5 years ago
  
  60588422
- fixing svtyper env for mergebatch · 0bdb7b05
  Thomas Faraut authored 5 years ago
  
  0bdb7b05

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