Commits · 0f0bf74df22cff66943f3eb221082da3e2ec30dd · Philippe Bardou / cnvpipelines

Sep 12, 2019
- adding svtypes.smk · 0f0bf74d
  Thomas Faraut authored 5 years ago
  
  0f0bf74d
Sep 11, 2019
- read group fixed · 865070cd
  Thomas Faraut authored 5 years ago
  
  865070cd
- get samples with batches · a7192ea3
  Thomas Faraut authored 5 years ago
  
  a7192ea3
Sep 10, 2019
- Merge branch 'refactor' · c509209f
  Thomas Faraut authored 5 years ago
  
  c509209f
- movin common.smk · 5fb94f26
  Thomas Faraut authored 5 years ago
  
  5fb94f26
- resolved conflict · 04241a90
  Thomas Faraut authored 5 years ago
  
  04241a90
- popsim fastq and fasta files are now temporary · e3bb89b7
  Thomas Faraut authored 5 years ago
  
  e3bb89b7
- made a file executable · a4750268
  Thomas Faraut authored 5 years ago
  
  a4750268
- adding popsimulation.smk · c4fa05a7
  Thomas Faraut authored 5 years ago
  
  c4fa05a7
- get_batches in mergebatch kept as the old version · 700e6ad1
  Thomas Faraut authored 5 years ago
  
  700e6ad1
- megebatches functionnal · 12125ec3
  Thomas Faraut authored 5 years ago
  
  12125ec3
- Preparing for simulation work-flow. · 7fe0baea
  Thomas Faraut authored 5 years ago
  
  Remaining problem commes from reference sequence "reference.fasta" absent at the beginning of the workflow.
  7fe0baea
- all snakefiles for refactor · 8492f706
  Thomas Faraut authored 5 years ago
  
  8492f706
- restoring genome.fa.gz · 8d56ce38
  Thomas Faraut authored 5 years ago
  
  8d56ce38
- Pulled down update to submodule_dir · 9cdb9085
  Thomas Faraut authored 5 years ago
  
  9cdb9085
- new implementation · 869f27a0
  Thomas Faraut authored 5 years ago
  
  869f27a0
- clean unused files · 6b6b4d46
  Thomas Faraut authored 5 years ago
  
  6b6b4d46
- git ignores now directories names old · 7d8bb380
  Thomas Faraut authored 5 years ago
  
  7d8bb380
- refbundle.smk becomes master · 38306668
  Thomas Faraut authored 5 years ago
  
  38306668
- reorganization for refbundle · d909ccac
  Thomas Faraut authored 5 years ago
  
  d909ccac
- new organization for detection · fd13c354
  Thomas Faraut authored 5 years ago
  
  fd13c354
- SnekamakeCommand py --> smk · 965bcf00
  Thomas Faraut authored 5 years ago
  
  965bcf00
- new factorization · 652f0410
  Thomas Faraut authored 5 years ago and Thomas Faraut committed 5 years ago
  
  652f0410
- a new common.smk · 59f16891
  Thomas Faraut authored 5 years ago
  
  59f16891
- new factorization · 84ce3509
  Thomas Faraut authored 5 years ago and Thomas Faraut committed 5 years ago
  
  84ce3509
- new installation procedures · 6b92b17b
  Thomas Faraut authored 5 years ago
  
  6b92b17b
- Update README.md · 4eabe5e3
  Thomas Faraut authored 5 years ago
  
  4eabe5e3
- updating lib · 12e85039
  Thomas Faraut authored 5 years ago
  
  12e85039
- POLYMORPH becomes MONOMORH · 41801b24
  Thomas Faraut authored 5 years ago
  
  41801b24
- updating lib · 1659335c
  Thomas Faraut authored 5 years ago
  
  1659335c
- Merge branch 'refactor' of forgemia.inra.fr:svdetection/cnvpipelines into refactor · 77615375
  Thomas Faraut authored 5 years ago
  
  77615375
- POLYMORPH becomes MONOMORH · 0b8646ec
  Thomas Faraut authored 5 years ago
  
  0b8646ec
Sep 09, 2019
- popsim fastq and fasta files are now temporary · f3c8d12b
  Thomas Faraut authored 5 years ago
  
  f3c8d12b
Sep 06, 2019
- updating popsim · 854fe42f
  Thomas Faraut authored 5 years ago
  
  854fe42f
- updating popsim · f389f946
  Thomas Faraut authored 5 years ago
  
  f389f946
- made a file executable · 0adb92e3
  Thomas Faraut authored 5 years ago
  
  0adb92e3
- Adding bcftools and tabix to lumpysvtyperpy27.yaml · 60e269c5
  Thomas Faraut authored 5 years ago
  
  60e269c5
Sep 04, 2019
- adding popsimulation.smk · 654e5573
  Thomas Faraut authored 5 years ago
  
  654e5573
- updating popsim · 51097db5
  Thomas Faraut authored 5 years ago
  
  51097db5
- updating popsim · bfe01a1a
  Thomas Faraut authored 5 years ago
  
  bfe01a1a

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