cluster.yaml

__default__:
  mem: 8
  name: "{rule}.{wildcards}"
  time: "24:00:00"

delly:
  mem: 16
  time: "36:00:00"

lumpy:
  mem: 12

pindel:
  mem: 16
  time: "24:00:00"

genomestrip:
  mem: 8

preprocess:
  mem: 16
  time: "72:00:00"

cnvpipeline:
  mem: 16
  time: "72:00:00"

chromsvmask:
  mem: 24
  h_vmem: 24

preparesvmask:
  mem: 16
  h_vmem: 16

dict:
 mem: 16
 h_vmem: 16

index:
  mem: 16
  h_vmem: 16

repeatmask:
  time: "36:00:00"
  mem: 8
  h_vmem: 8

bed2fasta:
  mem: 16
  h_vmem: 16

bwamap:
  time: "72:00:00"

markduplicates:
  mem: 64
  h_vmem: 64