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[global]

# batch system type: local, slurm or sge
# for genologin use slurm
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batch_system_type = local
# list of modules to load (space separated)
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# for genologin you can use bioinfo/delly_v0.7.7_parallel (not mandatory)
# default uses the conda delly installation
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# path environment to prepend (":" separated)
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# number of concurrent jobs to launch
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jobs = 100
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# svtoolkit home: genomestrip is now installed via conda
# sv_dir =
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[cluster]
# Ignore these options for local batch system type

# submission mode: drmaa or cluster
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submission_mode =
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# cluster submission command (ignore for DRMAA submission mode)
submission_command =

# DRMAA lib (ignore for cluster submission mode)
# For genologin use /tools/libraries/slurm-drmaa/slurm-drmaa-1.0.7/lib/libdrmaa.so
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# native submission commands: keep default on most cases
native_submission_options = ###DEFAULT###

# cluster config file
config = ###PROGRAM###/cluster.yaml

# enable drmaa parallelisation through DRMAA for Genomestrip (may cause exceed of number of concurrent jobs launched)
# True: enabled, False: disabled
sv_parallel_drmaa = True
sv_parallel_native_specs = ###DEFAULT###

[refbundle]

# Path to the Libraries folder extracted from RepBase archive file
# Optional (will use default libraries instead) but highly recommended :-)
# repeatmasker_lib_path =