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  • 2-better-error-management-needed-when-writing-tandem-preset
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Created with Raphaël 2.2.09Oct743223Sep17161254322Aug6529Jul16518Jun171413121098628May24171110987130Apr1629Mar25222118171615141325Feb2423181715146542131Jan282726251514131198213Dec730Nov29272620151413972131Oct302919181615123212Sep1110331Aug29281713Jul129524Jun222120191816231May302926252419171615141384327Apr242017161487654231Mar2928262523221514138765422Feb212019181716141211987643229Jan27262524232019181716151413121110987653222Dec2120191817161574226Nov25242322212018171615146129Oct272621201615141312IndentationAdd Ms Identification list window with run ID and file IDMerge branch 'renne' of git+ssh://git.renater.fr:2222/scmrepos/git/xtandempipeline/xtandempipeline into rennefirst modification to add msRunId viewindentationMerge remote-tracking branch 'origin/renne'Correct bug check protein doesnt workundo the doc deletionRemove noise suppressionCorrect output and remove residu potential modif 1, 2mergextpcpp (0.2.40-2) busterRemove output mzid line removing constWIP: writing q-values in ODS fileWIP: exporting q-values in ODSxtpcpp (0.2.40-2) busterxtpcpp_0.2.40-2xtpcpp_0.2.40-2new version and changelogxtpcpp_0.2.40-1xtpcpp_0.2.40-1q-value can be computed on Mascot resultsbetter englishbetter code to check peptide validity, new tooltips very helpfull in dialog boxuse size_t instead of unsigned int to countfirst running version with filter on q-valuefirst running version with filter on q-valuemake use of central util function to compute FDR the same way everywhereWIP: new utils function to compute FDR in one place... and may be change it easilycomputing q-values for tandem identificationsWIP: computing q-valuesFDR computation not obvious, keeping legacy methodFDR computation not obvious, keeping legacy methodfixing underestimation of FDR : this should be doubled, prior to Joshua et al 2007better error messages, MS run file check is made by workerthreadreads and writes contaminant removal mode in xpip filesuser interface to select contaminant removal modeuse of contaminant removal mode in projects, read and write new contaminant removal mode from XPIP fileslatest clang format referencenew feature to take into account different ways of removing contaminantsforgotten evalue returnpragma once in headerpreparing 0.2.39