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Commit e51036c5 authored by Langella Olivier's avatar Langella Olivier
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some missing information to parse in a near futur

parent afa06946
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......@@ -270,6 +270,31 @@ IdentificationPwizReader::read(
std::map<QString, ProteinMatch *> map_id2protein;
std::map<QString, PeptideXtpSp> map_id2peptide;
/* MISSING
*
<Inputs>
<SearchDatabase numDatabaseSequences="136828"
location="/home/thierry/test/MS-GF+/Genome_Z_mays_v5a_conta.fasta"
id="SearchDB_1"> <FileFormat> <cvParam cvRef="PSI-MS" accession="MS:1001348"
name="FASTA format"/>
</FileFormat>
<DatabaseName>
<userParam name="Genome_Z_mays_v5a_conta.fasta"/>
</DatabaseName>
</SearchDatabase>
<SpectraData
location="/home/thierry/test/MS-GF+/20170308_test_dig_Liquide_01.mzXML"
id="SID_1" name="20170308_test_dig_Liquide_01.mzXML"> <FileFormat> <cvParam
cvRef="PSI-MS" accession="MS:1000566" name="ISB mzXML file"/>
</FileFormat>
<SpectrumIDFormat>
<cvParam cvRef="PSI-MS" accession="MS:1000776" name="scan number only
nativeID format"/>
</SpectrumIDFormat>
</SpectraData>
</Inputs>
*
*/
for(pwiz::identdata::DBSequencePtr seq_ptr :
_pwiz_ident_data_file->sequenceCollection.dbSequences)
{
......@@ -479,8 +504,8 @@ IdentificationPwizReader::read(
// throw pappso::PappsoException(QObject::tr("Scan number not
// found"));
//<cvParam cvRef="PSI-MS" accession="MS:1000016" name="scan
//start time" value="4075.63" unitAccession="UO:0000010"
//unitName="second" unitCvRef="UO"/>
// start time" value="4075.63" unitAccession="UO:0000010"
// unitName="second" unitCvRef="UO"/>
rt = getQVariantDoubleParam(spectrum_ptr.get(),
pwiz::cv::MS_scan_start_time);
}
......
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