use target_include_directories in cmake file

src/CMakeLists.txt

@@ -21,7 +21,6 @@ FIND_PACKAGE( Odsstream REQUIRED ) #ODSSTREAM_INCLUDE_DIR AND ODSSTREAM_LIBRARY
 #SET (ODSSTREAM_DIR  "/home/olivier/eclipse/git/cpp_libodsstream")
 #SET (ODSSTREAM_INCLUDE_DIR "${ODSSTREAM_DIR}/src")
 #SET (ODSSTREAM_QT5_LIBRARY "${ODSSTREAM_DIR}/build/src/libodsstream-qt5.so")
-INCLUDE_DIRECTORIES(${ODSSTREAM_INCLUDE_DIR})
 
 SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${Qt5Xml_EXECUTABLE_COMPILE_FLAGS} ${Qt5Gui_EXECUTABLE_COMPILE_FLAGS} ${Qt5Svg_EXECUTABLE_COMPILE_FLAGS}")
 
@@ -34,14 +33,12 @@ SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${Qt5Xml_EXECUTABLE_COMPILE_FLAGS} ${Qt5
  SET (PAPPSOMSPP_INCLUDE_DIR "${PAPPSOMSPP_DIR}/src")
  SET (PAPPSOMSPP_QT4_LIBRARY "${PAPPSOMSPP_DIR}/cbuild/src/libpappsomspp-qt4.so")
 
-INCLUDE_DIRECTORIES( ${PAPPSOMSPP_INCLUDE_DIR} )
 
 set(CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/cmake_modules)
 
 FIND_PACKAGE(Pwiz REQUIRED)
-INCLUDE_DIRECTORIES( ${Pwiz_INCLUDE_DIR})
 IF (Pwiz_FOUND)
-  INCLUDE_DIRECTORIES( ${Pwiz_INCLUDE_DIR})
+  #INCLUDE_DIRECTORIES( ${Pwiz_INCLUDE_DIR})
   #FIND_PACKAGE(Boost REQUIRED)
   #INCLUDE_DIRECTORIES( ${Boost_INCLUDE_DIRS})
 ELSE (Pwiz_FOUND)
@@ -148,7 +145,8 @@ MESSAGE("XTPCPP_SRCS:  ${XTPCPP_SRCS}")
 
 
 ADD_EXECUTABLE(xtpcpp main.cpp ${CPP_FILES} ${XTPCPP_SRCS} ${GUI_UI_HDRS} ${XTPCPP_MOC_SRCS} ${xtpcpp_RCC_SRCS})
-target_include_directories (xtpcpp PUBLIC ${QT_INCLUDE_DIR} ${QT_QTCORE_INCLUDE_DIR} ${QT_QTGUI_INCLUDE_DIR} ${QT_QTSVG_INCLUDE_DIR} ${QT_QTXML_INCLUDE_DIR} ${CMAKE_CURRENT_SOURCE_DIR} ${CMAKE_CURRENT_BINARY_DIR} 
+
+target_include_directories (xtpcpp PUBLIC ${Pwiz_INCLUDE_DIR} ${PAPPSOMSPP_INCLUDE_DIR} ${ODSSTREAM_INCLUDE_DIR} ${QT_INCLUDE_DIR} ${QT_QTCORE_INCLUDE_DIR} ${QT_QTGUI_INCLUDE_DIR} ${QT_QTSVG_INCLUDE_DIR} ${QT_QTXML_INCLUDE_DIR} ${CMAKE_CURRENT_SOURCE_DIR} ${CMAKE_CURRENT_BINARY_DIR} 
 ${CMAKE_CURRENT_BINARY_DIR}/gui/peptide_detail_view/spectrum_widget ${CMAKE_CURRENT_SOURCE_DIR}/gui/peptide_detail_view/spectrum_widget)
   SET_TARGET_PROPERTIES(xtpcpp
     PROPERTIES OUTPUT_NAME xtpcpp