direct output for tsv spectral count

src/gui/main.ui

@@ -41,6 +41,7 @@
      <addaction name="actionMassChroQ"/>
      <addaction name="actionSpreadsheet"/>
      <addaction name="actionProticDb"/>
+     <addaction name="action_spectral_counting_mcq"/>
     </widget>
     <addaction name="actionLoad_results"/>
     <addaction name="actionLoad"/>
@@ -108,6 +109,11 @@
     <string>PROTICdb</string>
    </property>
   </action>
+  <action name="action_spectral_counting_mcq">
+   <property name="text">
+    <string>Spectral Counting mcq</string>
+   </property>
+  </action>
  </widget>
  <resources>
   <include location="../xtpcpp.qrc"/>
@@ -257,6 +263,22 @@
     </hint>
    </hints>
   </connection>
+  <connection>
+   <sender>action_spectral_counting_mcq</sender>
+   <signal>triggered()</signal>
+   <receiver>Main</receiver>
+   <slot>doActionSpectralCountingMcq()</slot>
+   <hints>
+    <hint type="sourcelabel">
+     <x>-1</x>
+     <y>-1</y>
+    </hint>
+    <hint type="destinationlabel">
+     <x>231</x>
+     <y>191</y>
+    </hint>
+   </hints>
+  </connection>
  </connections>
  <slots>
   <slot>selectXpipFile()</slot>
@@ -268,5 +290,6 @@
   <slot>doActionModifications()</slot>
   <slot>doActionLabelingMethods()</slot>
   <slot>doActionFasta()</slot>
+  <slot>doActionSpectralCountingMcq()</slot>
  </slots>
 </ui>

src/gui/mainwindow.cpp

@@ -31,9 +31,21 @@
 #include "ui_main.h"
 #include <pappsomspp/pappsoexception.h>
 #include <pappsomspp/fasta/fastaoutputstream.h>
+#include <odsstream/tsvoutputstream.h>
 #include "../utils/utils.h"
 #include "workerthread.h"
+#include "output/ods/comparspectrasheet.h"
 
+class TsvNoSheetOutput: public TsvOutputStream {
+public :
+    TsvNoSheetOutput(QTextStream & otxtstream):TsvOutputStream(otxtstream) {
+    }
+    ~TsvNoSheetOutput() {
+    }
+
+    virtual void writeSheet(const QString & sheetName) override {
+    }
+};
 
 MainWindow::MainWindow(QWidget *parent):
     QMainWindow(parent),
@@ -60,11 +72,11 @@ MainWindow::MainWindow(QWidget *parent):
     //QDockWidget *dock = new QDockWidget(tr("Protein List"), this);
     //dock->setWidget(_protein_list_window);
     //addDockWidget(Qt::RightDockWidgetArea, dock);
-    
+
     qRegisterMetaType<ProjectSp>("ProjectSp");
     qRegisterMetaType<AutomaticFilterParameters>("AutomaticFilterParameters");
     qRegisterMetaType<GroupingType>("GroupingType");
-    
+
 #if QT_VERSION >= 0x050000
     // Qt5 code
     /*
@@ -263,6 +275,40 @@ void MainWindow::doActionSpreadsheet() {
     qDebug() << "MainWindow::doActionSpreadsheet end";
 }
 
+void MainWindow::doActionSpectralCountingMcq()
+{
+    qDebug() << "MainWindow::doActionSpectralCountingMcq begin";
+
+    QSettings settings;
+    QString default_location = settings.value("path/scmcqfile", "").toString();
+
+    QString filename = QFileDialog::getSaveFileName(this, tr("Save spectral count TSV text file"),
+                       QString("%1/untitled.tsv").arg(default_location),
+                       tr("TSV (*.tsv)"));
+
+    if (filename.isEmpty()) {
+        return;
+    }
+
+    settings.setValue("path/scmcqfile", QFileInfo(filename).absolutePath());
+
+
+
+    QFile outFile;
+    outFile.setFileName(filename);
+    outFile.open(QIODevice::WriteOnly);
+    QTextStream * p_outputStream = new QTextStream(&outFile);
+    TsvNoSheetOutput* p_writer = new TsvNoSheetOutput(*p_outputStream);
+    ComparSpectraSheet spectra_sheet(nullptr, p_writer, _project_sp.get());
+    spectra_sheet.writeSheet();
+
+    p_writer->close();
+    delete p_writer;
+    delete p_outputStream;
+    outFile.close();
+    qDebug() << "MainWindow::doActionSpectralCountingMcq end";
+}
+
 void MainWindow::doActionFasta() {
     try {
 
@@ -324,7 +370,7 @@ void MainWindow::doActionMassChroQ() {
         }
 
         settings.setValue("path/mcqfile", QFileInfo(filename).absolutePath());
-        
+
         showWaitingMessage(tr("Writing %1 XPIP file").arg(QFileInfo(filename).fileName()));
         emit operateWritingMassChroqFile(filename, _project_sp);
         //emit operateXpipFile(filename);
@@ -352,7 +398,7 @@ void MainWindow::doActionProticDb() {
         }
 
         settings.setValue("path/proticfile", QFileInfo(filename).absolutePath());
-        
+
         showWaitingMessage(tr("Writing %1 PROTICdbML file").arg(QFileInfo(filename).fileName()));
         emit operateWritingProticFile(filename, _project_sp);
         //emit operateXpipFile(filename);

src/gui/mainwindow.h

@@ -71,6 +71,7 @@ public slots:
     void doOperationFailed(QString);
     void doOperationFinished();
     void doGroupingFinished();
+    void doActionSpectralCountingMcq();
     //void peptideEdited(QString peptideStr);
     // void setColor(const QColor &color);
     // void setShape(Shape shape);

src/output/ods/comparbasesheet.cpp

@@ -70,7 +70,7 @@ void ComparBaseSheet::writeHeaders(IdentificationGroup * p_ident)  {
     });
 
 
-    _p_writer->writeLine();
+    //_p_writer->writeLine();
     _p_writer->writeCell("Group ID");
     _p_writer->writeCell("Subgroup ID");
     //_p_writer->setCellAnnotation("MS sample name (MS run)");
@@ -95,9 +95,13 @@ void ComparBaseSheet::writeProteinMatch(const ProteinMatch * p_protein_match) {
     unsigned int subgroup_number = p_protein_match->getGrpProteinSp().get()->getSubGroupNumber();
     unsigned int rank_number = p_protein_match->getGrpProteinSp().get()->getRank();
 
-    _p_ods_export->setEvenOrOddStyle(group_number, _p_writer);
+    if (_p_ods_export != nullptr) {
+      _p_ods_export->setEvenOrOddStyle(group_number, _p_writer);
+    }
     _p_writer->writeCell(pappso::Utils::getLexicalOrderedString(group_number));
+    if (_p_ods_export != nullptr) {
     _p_ods_export->setEvenOrOddStyle(subgroup_number, _p_writer);
+    }
     _p_writer->writeCell(pappso::Utils::getLexicalOrderedString(subgroup_number));
     _p_writer->clearTableCellStyleRef();
     _p_writer->writeCell(p_protein_match->getGrpProteinSp().get()->getGroupingId());