Commit b2cecaee authored by Langella Olivier's avatar Langella Olivier
Browse files

docbook file to generate UNIX manpage

parent a1a5b867
<?xml version="1.0"?>
<!DOCTYPE refentry PUBLIC "-//OASIS//DTD DocBook V4.1//EN"
[
<!ENTITY progname "xtpcpp">
<!ENTITY progName "xtpcpp">
]>
<refentry>
<refentryinfo>
<date>2020 november 6</date>
</refentryinfo>
<refmeta>
<refentrytitle>
<application>&progName;</application>
</refentrytitle>
<manvolnum>1</manvolnum>
<refmiscinfo>&progName; proteomic software for peptides and proteins identification and quantification</refmiscinfo>
</refmeta>
<refnamediv>
<refname>
<application>&progName;</application>
</refname>
<refpurpose>
Open xtpcpp project file (.xpip extensions)
</refpurpose>
</refnamediv>
<refsynopsisdiv>
<cmdsynopsis>
<command>&progname;</command>
<arg><option><replaceable class="parameter">options</replaceable></option></arg>
<arg><option><replaceable class="parameter">filename ...</replaceable></option></arg>
</cmdsynopsis>
</refsynopsisdiv>
<refsect1>
<title>DESCRIPTION</title>
<para>
This manual page documents briefly the <command>&progName;</command> software.
This program can be used to load MS/MS identification engine results. It includes
peptide filtering, grouping algorithms, data visualization, peptide quantification using XICs.
</para>
</refsect1>
<refsect1>
<title>OPTIONS</title>
<variablelist>
<varlistentry>
<term><option>-h | --help</option></term>
<listitem>
<para>
Displays detailed usage information and exits.
</para>
</listitem>
</varlistentry>
<varlistentry>
<term><option>-v | --version</option></term>
<listitem>
<para>
Print the version of the software program.
</para>
</listitem>
</varlistentry>
<varlistentry>
<term><replaceable class="parameter">filename</replaceable></term>
<listitem>
<para>
X!TandemPipeline project file to be opened.
</para>
</listitem>
</varlistentry>
</variablelist>
</refsect1>
<refsect1>
<title>Bibliographic reference to be cited</title>
<para>
Langella O, Valot B, Balliau T, Blein-Nicolas M, Bonhomme L, Zivy M. (2017) X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification. J. Proteome Res., 2 (16) 494-503
</para>
</refsect1>
</refentry>
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