xtpcpp (0.1.16-1) stretch

CMakeLists.txt

@@ -9,7 +9,7 @@ IF(NOT CMAKE_BUILD_TYPE)
 #  SET(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING
 #      "Choose the type of build, options are: None Debug Release RelWithDebInfo MinSizeRel."
 #      FORCE)
-  SET(CMAKE_BUILD_TYPE Debug CACHE STRING
+  SET(CMAKE_BUILD_TYPE Release CACHE STRING
       "Choose the type of build, options are: None Debug Release RelWithDebInfo MinSizeRel."
       FORCE)
 ENDIF(NOT CMAKE_BUILD_TYPE)
@@ -34,7 +34,7 @@ SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++11")
 
 
 #depending on libpappsomspp version :
-SET(LIBPAPPSOMSPP_VERSION "0.2.36-1")
+SET(LIBPAPPSOMSPP_VERSION "0.2.37-1")
 configure_file (${CMAKE_SOURCE_DIR}/debian/control.cmake ${CMAKE_SOURCE_DIR}/debian/control  @ONLY)
 
 
@@ -42,7 +42,7 @@ SET(SOFTWARE_NAME "XTPcpp")
 
 SET(XTPCPP_VERSION_MAJOR "0")
 SET(XTPCPP_VERSION_MINOR "1")
-SET(XTPCPP_VERSION_PATCH "15")
+SET(XTPCPP_VERSION_PATCH "16")
 SET(XTPCPP_VERSION "${XTPCPP_VERSION_MAJOR}.${XTPCPP_VERSION_MINOR}.${XTPCPP_VERSION_PATCH}")
 
 # Set the CMAKE_PREFIX_PATH for the find_library fonction when using non

debian/changelog

+xtpcpp (0.1.16-1) stretch; urgency=medium
+
+  * qt5 switch
+  * about dialog window
+  * Tandem run window (local and HTCondor)
+
+ -- Olivier Langella <olivier.langella@u-psud.fr>  Mon, 18 Sep 2017 12:07:33 +0200
+
 xtpcpp (0.1.15-1) stretch; urgency=medium
 
   * ptm peptide list

src/core/proteinxtp.cpp

@@ -137,9 +137,10 @@ unsigned int ProteinXtp::countTrypticPeptidesForPAI() const {
     try {
         pappso::Enzyme kinase;
         kinase.setMiscleavage(0);
+        kinase.setTakeOnlyFirstWildcard(true);
         DigestionHandler digestion;
 
-        pappso::ProteinSp protein = std::make_shared<const pappso::Protein>(this->getDescription(),this->getOnlyAminoAcidSequence().replace("X",""));
+        pappso::ProteinSp protein = std::make_shared<const pappso::Protein>(*this);
         kinase.eat(0,protein,false,digestion);
 
         unsigned int count = 0;

src/core/tandem_run/tandemcondorprocess.cpp

@@ -373,7 +373,7 @@ void TandemCondorProcess::parseCondorQueue(QString & condor_q_xml) {
     } else {
         qDebug() << parser->errorString();
 
-        throw pappso::PappsoException(QObject::tr("Error reading condor_q xml string :\n %1").arg(condor_q_xml));
+        throw pappso::PappsoException(QObject::tr("Error reading condor_q xml string :\n %1\n%2").arg(parser->errorString()).arg(condor_q_xml));
     }
     delete parser;
 

src/input/condorqxmlsaxhandler.cpp

@@ -145,7 +145,7 @@ bool CondorQxmlSaxHandler::endDocument() {
     }
     _count_status[(std::int8_t) CondorJobStatus::Completed] = really_completed_jobs;
 
-     _tandem_condor_process->setCondorJobStatus(_count_status);
+    _tandem_condor_process->setCondorJobStatus(_count_status);
     /*
     xtandemCondorAnalysis.setJobCompleted(junexpanded, jidle, jrunning,
     		jremoved, reallyCompletedJobs, jheld, jsubmission_error);
@@ -227,6 +227,7 @@ bool CondorQxmlSaxHandler::endElement_c() {
     qDebug() << "currentRemoteHost:" << _current_remote_host <<
              " currentLastRemoteHost" << _current_last_remote_host << " "
              << (std::int8_t)_condor_job_status;
+    return true;
 }
 
 /*