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Commit b092082d authored by Olivier Langella's avatar Olivier Langella
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xtpcpp (0.1.16-1) stretch

parent 8d2424f7
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Tags xtpcpp_0.1.16-1
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......@@ -9,7 +9,7 @@ IF(NOT CMAKE_BUILD_TYPE)
# SET(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING
# "Choose the type of build, options are: None Debug Release RelWithDebInfo MinSizeRel."
# FORCE)
SET(CMAKE_BUILD_TYPE Debug CACHE STRING
SET(CMAKE_BUILD_TYPE Release CACHE STRING
"Choose the type of build, options are: None Debug Release RelWithDebInfo MinSizeRel."
FORCE)
ENDIF(NOT CMAKE_BUILD_TYPE)
......@@ -34,7 +34,7 @@ SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++11")
#depending on libpappsomspp version :
SET(LIBPAPPSOMSPP_VERSION "0.2.36-1")
SET(LIBPAPPSOMSPP_VERSION "0.2.37-1")
configure_file (${CMAKE_SOURCE_DIR}/debian/control.cmake ${CMAKE_SOURCE_DIR}/debian/control @ONLY)
......@@ -42,7 +42,7 @@ SET(SOFTWARE_NAME "XTPcpp")
SET(XTPCPP_VERSION_MAJOR "0")
SET(XTPCPP_VERSION_MINOR "1")
SET(XTPCPP_VERSION_PATCH "15")
SET(XTPCPP_VERSION_PATCH "16")
SET(XTPCPP_VERSION "${XTPCPP_VERSION_MAJOR}.${XTPCPP_VERSION_MINOR}.${XTPCPP_VERSION_PATCH}")
# Set the CMAKE_PREFIX_PATH for the find_library fonction when using non
......
xtpcpp (0.1.16-1) stretch; urgency=medium
* qt5 switch
* about dialog window
* Tandem run window (local and HTCondor)
-- Olivier Langella <olivier.langella@u-psud.fr> Mon, 18 Sep 2017 12:07:33 +0200
xtpcpp (0.1.15-1) stretch; urgency=medium
* ptm peptide list
......
......@@ -137,9 +137,10 @@ unsigned int ProteinXtp::countTrypticPeptidesForPAI() const {
try {
pappso::Enzyme kinase;
kinase.setMiscleavage(0);
kinase.setTakeOnlyFirstWildcard(true);
DigestionHandler digestion;
pappso::ProteinSp protein = std::make_shared<const pappso::Protein>(this->getDescription(),this->getOnlyAminoAcidSequence().replace("X",""));
pappso::ProteinSp protein = std::make_shared<const pappso::Protein>(*this);
kinase.eat(0,protein,false,digestion);
unsigned int count = 0;
......
......@@ -373,7 +373,7 @@ void TandemCondorProcess::parseCondorQueue(QString & condor_q_xml) {
} else {
qDebug() << parser->errorString();
throw pappso::PappsoException(QObject::tr("Error reading condor_q xml string :\n %1").arg(condor_q_xml));
throw pappso::PappsoException(QObject::tr("Error reading condor_q xml string :\n %1\n%2").arg(parser->errorString()).arg(condor_q_xml));
}
delete parser;
......
......@@ -145,7 +145,7 @@ bool CondorQxmlSaxHandler::endDocument() {
}
_count_status[(std::int8_t) CondorJobStatus::Completed] = really_completed_jobs;
_tandem_condor_process->setCondorJobStatus(_count_status);
_tandem_condor_process->setCondorJobStatus(_count_status);
/*
xtandemCondorAnalysis.setJobCompleted(junexpanded, jidle, jrunning,
jremoved, reallyCompletedJobs, jheld, jsubmission_error);
......@@ -227,6 +227,7 @@ bool CondorQxmlSaxHandler::endElement_c() {
qDebug() << "currentRemoteHost:" << _current_remote_host <<
" currentLastRemoteHost" << _current_last_remote_host << " "
<< (std::int8_t)_condor_job_status;
return true;
}
/*
......
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