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Commit 93afc112 authored by Langella Olivier's avatar Langella Olivier
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wip: tandem run dialog

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src/gui/load_results_dialog/loadresultsdialog.h
+ 0
− 1
View file @ 93afc112
......@@ -45,7 +45,6 @@ public:
AutomaticFilterParameters getAutomaticFilterParameters() const;
QStringList getFileList() const;
bool isIndividual() const;
public slots:
void chooseFiles();
void clearFileList();
......
src/gui/tandem_run_dialog/tandem_run_dialog.ui
+ 97
− 11
View file @ 93afc112
......@@ -7,7 +7,7 @@
<x>0</x>
<y>0</y>
<width>573</width>
<height>559</height>
<height>609</height>
</rect>
</property>
<property name="windowTitle">
......@@ -21,7 +21,7 @@
</property>
<layout class="QHBoxLayout" name="horizontalLayout_6">
<item>
<widget class="QLabel" name="label_2">
<widget class="QLabel" name="tandem_bin_label">
<property name="text">
<string>TextLabel</string>
</property>
......@@ -55,10 +55,30 @@
<property name="title">
<string>Choose presets</string>
</property>
<layout class="QHBoxLayout" name="horizontalLayout_3">
<layout class="QHBoxLayout" name="horizontalLayout_7">
<item>
<widget class="QComboBox" name="preset_combobox"/>
</item>
<item>
<spacer name="horizontalSpacer_6">
<property name="orientation">
<enum>Qt::Horizontal</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>40</width>
<height>20</height>
</size>
</property>
</spacer>
</item>
<item>
<widget class="QPushButton" name="pushButton_7">
<property name="text">
<string>edit</string>
</property>
</widget>
</item>
</layout>
</widget>
</item>
......@@ -148,7 +168,7 @@
</property>
<layout class="QHBoxLayout" name="horizontalLayout_4">
<item>
<widget class="QLabel" name="label">
<widget class="QLabel" name="output_directory_label">
<property name="text">
<string>TextLabel</string>
</property>
......@@ -220,7 +240,7 @@
<hints>
<hint type="sourcelabel">
<x>550</x>
<y>447</y>
<y>310</y>
</hint>
<hint type="destinationlabel">
<x>550</x>
......@@ -236,7 +256,7 @@
<hints>
<hint type="sourcelabel">
<x>476</x>
<y>548</y>
<y>598</y>
</hint>
<hint type="destinationlabel">
<x>568</x>
......@@ -252,7 +272,7 @@
<hints>
<hint type="sourcelabel">
<x>562</x>
<y>548</y>
<y>598</y>
</hint>
<hint type="destinationlabel">
<x>648</x>
......@@ -267,8 +287,8 @@
<slot>clearFileList()</slot>
<hints>
<hint type="sourcelabel">
<x>434</x>
<y>441</y>
<x>464</x>
<y>310</y>
</hint>
<hint type="destinationlabel">
<x>606</x>
......@@ -276,11 +296,77 @@
</hint>
</hints>
</connection>
<connection>
<sender>add_files_button</sender>
<signal>clicked()</signal>
<receiver>TandemRunDialog</receiver>
<slot>selectFastaFiles()</slot>
<hints>
<hint type="sourcelabel">
<x>505</x>
<y>302</y>
</hint>
<hint type="destinationlabel">
<x>630</x>
<y>331</y>
</hint>
</hints>
</connection>
<connection>
<sender>pushButton_3</sender>
<signal>clicked()</signal>
<receiver>TandemRunDialog</receiver>
<slot>selectMzFiles()</slot>
<hints>
<hint type="sourcelabel">
<x>536</x>
<y>451</y>
</hint>
<hint type="destinationlabel">
<x>613</x>
<y>450</y>
</hint>
</hints>
</connection>
<connection>
<sender>pushButton_5</sender>
<signal>clicked()</signal>
<receiver>TandemRunDialog</receiver>
<slot>selectOutputDirectory()</slot>
<hints>
<hint type="sourcelabel">
<x>531</x>
<y>537</y>
</hint>
<hint type="destinationlabel">
<x>651</x>
<y>519</y>
</hint>
</hints>
</connection>
<connection>
<sender>preset_combobox</sender>
<signal>currentIndexChanged(QString)</signal>
<receiver>TandemRunDialog</receiver>
<slot>setPresetName(QString)</slot>
<hints>
<hint type="sourcelabel">
<x>64</x>
<y>149</y>
</hint>
<hint type="destinationlabel">
<x>603</x>
<y>172</y>
</hint>
</hints>
</connection>
</connections>
<slots>
<slot>chooseFiles()</slot>
<slot>reject()</slot>
<slot>accept()</slot>
<slot>clearFileList()</slot>
<slot>selectFastaFiles()</slot>
<slot>selectMzFiles()</slot>
<slot>selectOutputDirectory()</slot>
<slot>setPresetName(QString)</slot>
</slots>
</ui>
src/gui/tandem_run_dialog/tandemrundialog.cpp
+ 93
− 6
View file @ 93afc112
......@@ -44,7 +44,10 @@ TandemRunDialog::TandemRunDialog(QWidget * parent):
ui->setupUi(this);
this->setModal(true);
_p_fasta_file_list = new QStringListModel();
_p_mz_file_list = new QStringListModel();
ui->fasta_file_listview->setModel(_p_fasta_file_list);
ui->mz_file_listview->setModel(_p_mz_file_list);
#if QT_VERSION >= 0x050000
// Qt5 code
/*
......@@ -56,28 +59,112 @@ TandemRunDialog::TandemRunDialog(QWidget * parent):
// Qt4 code
#endif
reset();
fillPresetComboBox();
qDebug() << "TandemRunDialog::TandemRunDialog end";
}
TandemRunDialog::~TandemRunDialog()
{
delete ui;
delete _p_fasta_file_list;
delete _p_mz_file_list;
}
void TandemRunDialog::setPresetName(QString preset_name) {
QSettings settings;
settings.setValue("tandem/preset_name", preset_name);
}
void TandemRunDialog::fillPresetComboBox() {
ui->preset_combobox->clear();
QSettings settings;
QString default_preset_location = settings.value("path/tandemrun_preset_directory", "").toString();
QString default_preset_name = settings.value("tandem/preset_name", "").toString();
QDir preset_dir(default_preset_location);
QStringList filters;
filters << "*.xml";
preset_dir.setNameFilters(filters);
for (QFileInfo file_info: preset_dir.entryInfoList() ) {
ui->preset_combobox->addItem(file_info.baseName(), QVariant(file_info.absoluteFilePath()));
}
int index = ui->preset_combobox->findText(default_preset_name);
if ( index != -1 ) { // -1 for not found
ui->preset_combobox->setCurrentIndex(index);
}
}
void TandemRunDialog::reset() {
QSettings settings;
QString default_output_location = settings.value("path/identificationfiles", "").toString();
QString tandem_bin_path = settings.value("path/tandem_bin", "/usr/bin/tandem").toString();
ui->output_directory_label->setText(default_output_location);
ui->tandem_bin_label->setText(tandem_bin_path);
_p_fasta_file_list->stringList().clear();
_p_mz_file_list->stringList().clear();
/*
if (filenames.size() > 0) {
settings.setValue("path/identificationfiles", QFileInfo(filenames[0]).absolutePath());
}*/
}
void TandemRunDialog::selectOutputDirectory() {
try {
QSettings settings;
QString default_output_location = settings.value("path/identificationfiles", "").toString();
QString directory = QFileDialog::getExistingDirectory(this,tr("Choose output directory"),default_output_location );
if (!directory.isEmpty()) {
settings.setValue("path/identificationfiles", directory);
ui->output_directory_label->setText(directory);
}
}
catch (pappso::PappsoException & error) {
//QMessageBox::warning(this,
// tr("Error choosing identification result files : %1").arg(error.qwhat()), error);
}
}
void TandemRunDialog::selectFastaFiles() {
try {
QSettings settings;
QString default_location = settings.value("path/tandemrun_fastafiles_directory", "").toString();
QString default_fasta_location = settings.value("path/tandemrun_fastafiles_directory", "").toString();
QStringList filenames = QFileDialog::getOpenFileNames(this,tr("FASTA files"),default_location,
QStringList filenames = QFileDialog::getOpenFileNames(this,tr("FASTA files"),default_fasta_location,
tr("FASTA files (*.fasta);;all files (*)") );
if (filenames.size() > 0) {
settings.setValue("path/tandemrun_fastafiles_directory", QFileInfo(filenames[0]).absolutePath());
}
_p_fasta_file_list->setStringList(filenames);
ui->fasta_file_listview->setModel(_p_fasta_file_list);
QStringList file_list = _p_fasta_file_list->stringList();
file_list.append(filenames);
_p_fasta_file_list->setStringList(file_list);
}
catch (pappso::PappsoException & error) {
//QMessageBox::warning(this,
// tr("Error choosing identification result files : %1").arg(error.qwhat()), error);
}
}
void TandemRunDialog::selectMzFiles() {
try {
QSettings settings;
QString default_mz_location = settings.value("path/tandemrun_mzfiles_directory", "").toString();
QStringList filenames = QFileDialog::getOpenFileNames(this,tr("select peak list files"),default_mz_location,
tr("mz files (*.mzXML *.mzML *.mgf);;all files (*)") );
if (filenames.size() > 0) {
settings.setValue("path/tandemrun_mzfiles_directory", QFileInfo(filenames[0]).absolutePath());
}
QStringList file_list = _p_mz_file_list->stringList();
file_list.append(filenames);
_p_mz_file_list->setStringList(file_list);
}
catch (pappso::PappsoException & error) {
......
src/gui/tandem_run_dialog/tandemrundialog.h
+ 8
− 1
View file @ 93afc112
......@@ -45,13 +45,20 @@ public:
explicit TandemRunDialog(QWidget * parent);
~TandemRunDialog();
void reset();
public slots:
void selectFastaFiles();
void selectFastaFiles();
void selectMzFiles();
void selectOutputDirectory();
void setPresetName(QString preset_name);
signals:
private:
void fillPresetComboBox();
private:
Ui::TandemRunDialog *ui;
QStringListModel * _p_fasta_file_list;
QStringListModel * _p_mz_file_list;
};
......
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