sequence Li count

src/core/proteinmatch.cpp

@@ -187,11 +187,11 @@ unsigned int ProteinMatch::countPeptideMatch(ValidationState state) const {
     });
 }
 
-size_t ProteinMatch::countUniqueSequence(ValidationState state)const {
+size_t ProteinMatch::countUniqueSequenceLi(ValidationState state)const {
     std::set<QString> sequence_list;
     for (auto & p_peptide_match : _peptide_match_list) {
         if (p_peptide_match->getValidationState() >= state) {
-            sequence_list.insert(p_peptide_match->getPeptideXtpSp().get()->getSequence());
+            sequence_list.insert(p_peptide_match->getPeptideXtpSp().get()->getSequenceLi());
         }
     }
     return sequence_list.size();

src/core/proteinmatch.h

@@ -80,7 +80,7 @@ public:
 
     /** @brief count unique identified sequences (from valid and cheked spectrums)
      * */
-    size_t countUniqueSequence(ValidationState state)const;
+    size_t countUniqueSequenceLi(ValidationState state)const;
 
 
     const pappso::GrpProteinSp & getGrpProteinSp() const;

src/grouping/groupinggroup.cpp

@@ -111,19 +111,19 @@ std::size_t GroupingGroup::countSpecificSpectrum(const ProteinMatch * p_protein_
 
 std::size_t GroupingGroup::countSpecificSequence(const ProteinMatch * p_protein_match) const {
     if (_number_of_subgroup == 1) {
-        return p_protein_match->countUniqueSequence(ValidationState::validAndChecked);
+        return p_protein_match->countUniqueSequenceLi(ValidationState::validAndChecked);
     }
     std::set<QString> sequence_list_in;
     for (auto && p_peptide_match :p_protein_match->getPeptideMatchList()) {
         if (p_peptide_match->isValidAndChecked()) {
-            sequence_list_in.insert(p_peptide_match->getPeptideXtpSp().get()->getSequence());
+            sequence_list_in.insert(p_peptide_match->getPeptideXtpSp().get()->getSequenceLi());
         }
     }
     std::set<QString> sequence_list_out;
     unsigned int sg_number = p_protein_match->getGrpProteinSp().get()->getSubGroupNumber();
     for (auto && pair_peptide_match :_pair_sg_number_peptide_match_list) {
         if (pair_peptide_match.first != sg_number) {
-            sequence_list_out.insert(pair_peptide_match.second->getPeptideXtpSp().get()->getSequence());
+            sequence_list_out.insert(pair_peptide_match.second->getPeptideXtpSp().get()->getSequenceLi());
         }
     }
 

src/gui/protein_list_view/proteintablemodel.cpp

@@ -181,7 +181,7 @@ QVariant ProteinTableModel::data(const QModelIndex &index, int role ) const {
         }
 
         if (_column_assignment[col] == (std::int8_t) ProteinListColumn::sequence ) {
-            return QVariant ((qreal) _p_identification_group->getProteinMatchList().at(row)->countUniqueSequence(ValidationState::validAndChecked));
+            return QVariant ((qreal) _p_identification_group->getProteinMatchList().at(row)->countUniqueSequenceLi(ValidationState::validAndChecked));
         }
         if (_column_assignment[col] == (std::int8_t) ProteinListColumn::specific_sequence ) {
             GroupingGroup * p_groupin_group = _p_identification_group->getProteinMatchList().at(row)->getGroupingGroupSp().get();