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Commit 5a47d821 authored by Olivier Langella's avatar Olivier Langella
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new filter parameter widget added

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src/CMakeLists.txt
+ 3
− 0
View file @ 5a47d821
......@@ -87,6 +87,7 @@ SET(XTPCPP_SRCS
./gui/peptide_list_view/peptidelistwindow.cpp
./gui/peptide_list_view/peptidetablemodel.cpp
./gui/peptide_list_view/peptidetableproxymodel.cpp
./gui/project_view/automatic_filter_widget/automaticfilterwidget.cpp
./gui/project_view/identification_group_widget/identificationgroupwidget.cpp
./gui/project_view/projectwindow.cpp
./gui/protein_view/proteinwindow.cpp
......@@ -99,6 +100,7 @@ SET (GUI_UIS
./gui/main.ui
./gui/peptide_detail_view/peptide_detail_view.ui
./gui/peptide_list_view/peptide_view.ui
./gui/project_view/automatic_filter_widget/automatic_filter_widget.ui
./gui/project_view/identification_group_widget/identification_group_widget.ui
./gui/project_view/project_view.ui
./gui/protein_list_view/protein_view.ui
......@@ -113,6 +115,7 @@ SET(XTPCPP_MOC_HDRS
./gui/peptide_list_view/peptidelistwindow.h
./gui/peptide_list_view/peptidetablemodel.h
./gui/peptide_list_view/peptidetableproxymodel.h
./gui/project_view/automatic_filter_widget/automaticfilterwidget.h
./gui/project_view/identification_group_widget/identificationgroupwidget.h
./gui/project_view/projectwindow.h
./gui/protein_list_view/proteinlistwindow.h
......
src/gui/project_view/automatic_filter_widget/automatic_filter_widget.ui 0 → 100644
+ 203
− 0
View file @ 5a47d821
<?xml version="1.0" encoding="UTF-8"?>
<ui version="4.0">
<class>AutomaticFilterWidget</class>
<widget class="QWidget" name="AutomaticFilterWidget">
<property name="geometry">
<rect>
<x>0</x>
<y>0</y>
<width>533</width>
<height>300</height>
</rect>
</property>
<property name="windowTitle">
<string>Form</string>
</property>
<layout class="QGridLayout" name="gridLayout">
<item row="0" column="0">
<layout class="QFormLayout" name="formLayout_1">
<property name="fieldGrowthPolicy">
<enum>QFormLayout::AllNonFixedFieldsGrow</enum>
</property>
<item row="0" column="0">
<widget class="QLabel" name="sample_number_label">
<property name="text">
<string>peptide Evalue</string>
</property>
</widget>
</item>
<item row="1" column="0">
<widget class="QLabel" name="group_number_label">
<property name="text">
<string>number of peptides per protein</string>
</property>
</widget>
</item>
<item row="2" column="0">
<widget class="QLabel" name="subgroup_number_label">
<property name="text">
<string>protein Evalue</string>
</property>
</widget>
</item>
<item row="3" column="0">
<widget class="QLabel" name="label_2">
<property name="text">
<string>protein Evalue (log10)</string>
</property>
</widget>
</item>
<item row="0" column="1">
<widget class="QDoubleSpinBox" name="peptide_evalue_spinbox">
<property name="decimals">
<number>3</number>
</property>
<property name="maximum">
<double>1.000000000000000</double>
</property>
<property name="singleStep">
<double>0.010000000000000</double>
</property>
<property name="value">
<double>0.050000000000000</double>
</property>
</widget>
</item>
<item row="1" column="1">
<widget class="QSpinBox" name="peptide_number_spinbox">
<property name="minimum">
<number>1</number>
</property>
<property name="value">
<number>2</number>
</property>
</widget>
</item>
<item row="2" column="1">
<widget class="QDoubleSpinBox" name="protein_evalue_spinbox">
<property name="decimals">
<number>8</number>
</property>
<property name="maximum">
<double>1.000000000000000</double>
</property>
<property name="singleStep">
<double>0.000001000000000</double>
</property>
<property name="value">
<double>0.000100000000000</double>
</property>
</widget>
</item>
<item row="3" column="1">
<widget class="QDoubleSpinBox" name="protein_evalue_log_spinbox">
<property name="maximum">
<double>0.000000000000000</double>
</property>
<property name="value">
<double>-3.000000000000000</double>
</property>
</widget>
</item>
<item row="4" column="1">
<widget class="QPushButton" name="set_param_button">
<property name="text">
<string>set parameters</string>
</property>
</widget>
</item>
</layout>
</item>
</layout>
</widget>
<resources/>
<connections>
<connection>
<sender>peptide_evalue_spinbox</sender>
<signal>valueChanged(double)</signal>
<receiver>AutomaticFilterWidget</receiver>
<slot>doPeptideEvalue(double)</slot>
<hints>
<hint type="sourcelabel">
<x>382</x>
<y>23</y>
</hint>
<hint type="destinationlabel">
<x>607</x>
<y>274</y>
</hint>
</hints>
</connection>
<connection>
<sender>peptide_number_spinbox</sender>
<signal>valueChanged(int)</signal>
<receiver>AutomaticFilterWidget</receiver>
<slot>doPeptideNumber(int)</slot>
<hints>
<hint type="sourcelabel">
<x>488</x>
<y>62</y>
</hint>
<hint type="destinationlabel">
<x>557</x>
<y>196</y>
</hint>
</hints>
</connection>
<connection>
<sender>protein_evalue_spinbox</sender>
<signal>valueChanged(double)</signal>
<receiver>AutomaticFilterWidget</receiver>
<slot>doProteinEvalue(double)</slot>
<hints>
<hint type="sourcelabel">
<x>422</x>
<y>95</y>
</hint>
<hint type="destinationlabel">
<x>558</x>
<y>233</y>
</hint>
</hints>
</connection>
<connection>
<sender>protein_evalue_log_spinbox</sender>
<signal>valueChanged(double)</signal>
<receiver>AutomaticFilterWidget</receiver>
<slot>doProteinLogEvalue(double)</slot>
<hints>
<hint type="sourcelabel">
<x>302</x>
<y>125</y>
</hint>
<hint type="destinationlabel">
<x>582</x>
<y>248</y>
</hint>
</hints>
</connection>
<connection>
<sender>set_param_button</sender>
<signal>clicked()</signal>
<receiver>AutomaticFilterWidget</receiver>
<slot>doSetParameters()</slot>
<hints>
<hint type="sourcelabel">
<x>366</x>
<y>162</y>
</hint>
<hint type="destinationlabel">
<x>534</x>
<y>253</y>
</hint>
</hints>
</connection>
</connections>
<slots>
<slot>doPeptideEvalue(double)</slot>
<slot>doPeptideNumber(int)</slot>
<slot>doProteinEvalue(double)</slot>
<slot>doProteinLogEvalue(double)</slot>
<slot>doSetParameters()</slot>
</slots>
</ui>
src/gui/project_view/automatic_filter_widget/automaticfilterwidget.cpp 0 → 100644
+ 71
− 0
View file @ 5a47d821
/*******************************************************************************
* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
*
* This file is part of XTPcpp.
*
* XTPcpp is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* XTPcpp is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with XTPcpp. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
******************************************************************************/
#include "automaticfilterwidget.h"
#include "ui_automatic_filter_widget.h"
#include <QDebug>
AutomaticFilterWidget::AutomaticFilterWidget(ProjectWindow * parent):
QWidget(parent),
ui(new Ui::AutomaticFilterWidget)
{
qDebug() << "AutomaticFilterWidget::AutomaticFilterWidget begin";
_p_project_window = parent;
ui->setupUi(this);
#if QT_VERSION >= 0x050000
// Qt5 code
/*
connect(&workerThread, &QThread::finished, worker, &QObject::deleteLater);
connect(this, &PtSpectrumViewer::operateMsDataFile, worker, &PwizLoaderThread::doMsDataFileLoad);
connect(worker, &PwizLoaderThread::msDataReady, this, &PtSpectrumViewer::handleMsDataFile);
*/
#else
// Qt4 code
connect (_p_project_window, SIGNAL(identificationGroupGrouped(IdentificationGroup *)), this,SLOT(doIdentificationGroupGrouped(IdentificationGroup *)));
#endif
qDebug() << "AutomaticFilterWidget::AutomaticFilterWidget end";
}
AutomaticFilterWidget::~AutomaticFilterWidget()
{
delete ui;
}
void AutomaticFilterWidget::doPeptideEvalue(double evalue) {
_parameters.setFilterPeptideEvalue(evalue);
}
void AutomaticFilterWidget::doProteinEvalue(double evalue) {
_parameters.setFilterProteinEvalue(evalue);
}
void AutomaticFilterWidget::doProteinLogEvalue(double evalue) {
_parameters.setFilterProteinEvalue(std::pow(10, evalue));
}
void AutomaticFilterWidget::doPeptideNumber(int number) {
_parameters.setFilterMinimumPeptidePerMatch((unsigned int) number);
}
void AutomaticFilterWidget::doSetParameters() {
}
src/gui/project_view/automatic_filter_widget/automaticfilterwidget.h 0 → 100644
+ 59
− 0
View file @ 5a47d821
/*******************************************************************************
* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
*
* This file is part of XTPcpp.
*
* XTPcpp is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* XTPcpp is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with XTPcpp. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
******************************************************************************/
#ifndef AUTOMATICFILTERWIDGET_H
#define AUTOMATICFILTERWIDGET_H
#include "../projectwindow.h"
#include "../../../core/automaticfilterparameters.h"
namespace Ui {
class AutomaticFilterWidget;
}
class AutomaticFilterWidget : public QWidget
{
Q_OBJECT
public:
explicit AutomaticFilterWidget(ProjectWindow * parent);
~AutomaticFilterWidget();
public slots:
void doPeptideEvalue(double evalue);
void doProteinEvalue(double evalue);
void doProteinLogEvalue(double evalue);
void doPeptideNumber(int number);
void doSetParameters();
private:
Ui::AutomaticFilterWidget *ui;
ProjectWindow *_p_project_window;
AutomaticFilterParameters _parameters;
};
#endif // AUTOMATICFILTERWIDGET_H
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