html sequence coverage

src/core/proteinmatch.cpp

@@ -278,20 +278,21 @@ const QString ProteinMatch::getHtmlSequence() const
     }
     QString sequence = getProteinXtpSp().get()->getSequence();
     QString sequence_html;
-    for (unsigned int i=0; i < prot_size; i++) {
-        
-        if(cover_bool[i]) {
-            sequence_html.append(QString("<span style=\"background-color:yellow;\">%1").arg(sequence[i]));
-            for (;i < prot_size; i++) {
-                if(cover_bool[i]) {
-                    sequence_html.append(sequence[i]);
-                }
-                else {
-                    sequence_html.append(QString("</span>%1").arg(sequence[i]));
-                    break;
+        for (unsigned int i=0; i < prot_size; i++) {
+            
+            if(cover_bool[i]) {
+                sequence_html.append(QString("<span style=\"background-color:yellow;\">%1").arg(sequence[i]));
+                i++;
+                for (;i < prot_size; i++) {
+                    if(cover_bool[i]) {
+                        sequence_html.append(sequence[i]);
+                    }
+                    else {
+                        sequence_html.append(QString("</span>%1").arg(sequence[i]));
+                        break;
+                    }
                 }
-            }
-            sequence_html.append(QString("</span>"));
+                sequence_html.append(QString("</span>"));
         }
         else {
             sequence_html.append(sequence[i]);

src/gui/peptide_list_view/peptidetablemodel.cpp

@@ -98,7 +98,7 @@ int PeptideTableModel::rowCount(const QModelIndex &parent ) const {
     return 0;
 }
 int PeptideTableModel::columnCount(const QModelIndex &parent ) const {
-    return 8;
+    return 10;
 }
 QVariant PeptideTableModel::headerData(int section, Qt::Orientation orientation, int role) const
 {
@@ -123,6 +123,10 @@ QVariant PeptideTableModel::headerData(int section, Qt::Orientation orientation,
                 return QString("sequence");
             case 7:
                 return QString("modifs");
+            case 8:
+                return QString("start");
+            case 9:
+                return QString("length");
             }
         }
     }
@@ -184,6 +188,11 @@ QVariant PeptideTableModel::data(const QModelIndex &index, int role ) const {
             if (col ==7) {
                 return _p_protein_match->getPeptideMatchList().at(row)->getPeptideXtpSp().get()->getModifString();
             }
+            if (col ==8) {
+                return QVariant((qreal) _p_protein_match->getPeptideMatchList().at(row)->getStart()+1);
+            }if (col ==9) {
+                return QVariant((qreal) _p_protein_match->getPeptideMatchList().at(row)->getPeptideXtpSp().get()->size());
+            }
         }
         return QString("Row%1, Column%2")
                .arg(index.row() + 1)