protect pwiz objects

src/utils/readspectrum.cpp

@@ -38,10 +38,15 @@
 #include <pwiz/data/msdata/MSData.hpp>
 #include <locale>
 
+#include <pwiz/data/msdata/MSDataFile.hpp>
 //http://sourceforge.net/p/proteowizard/mailman/message/28245157/
 
 using namespace pappso;
 
+pwiz::msdata::MSDataFile * getPwizMSDataFile(const QString & filename);
+
+pappso::QualifiedSpectrum getQualifiedSpectrumFromPwizMSDataFile(pwiz::msdata::MSDataFile * p_ms_data_file, unsigned int scan_num);
+
 
 pwiz::msdata::MSDataFile * getPwizMSDataFile(const QString & filename) {
     qDebug() << "getPwizMSDataFile opening file " << filename ;

src/utils/readspectrum.h

@@ -26,16 +26,15 @@
 
 #include <QString>
 #include <pappsomspp/spectrum/qualifiedspectrum.h>
-#include <pwiz/data/msdata/MSDataFile.hpp>
 #include <map>
 #include "../core/msrun.h"
 
 pappso::Spectrum readSpectrum(const QString & filename, unsigned int scan_num,unsigned int & precursor_charge_state);
 
-pwiz::msdata::MSDataFile * getPwizMSDataFile(const QString & filename);
-
-pappso::QualifiedSpectrum getQualifiedSpectrumFromPwizMSDataFile(pwiz::msdata::MSDataFile * p_ms_data_file, unsigned int scan_num);
 
+namespace pwiz::msdata {
+class MSDataFile;
+}
 //MzFormat getPwizMSDataFileFormat(pwiz::msdata::MSDataFile * p_ms_data_file);
 
 class SpectrumStore {