fix forgotten ALanine

src/core/proteinxtp.cpp

@@ -153,7 +153,7 @@ QString
 ProteinXtp::getOnlyAminoAcidSequence() const
 {
   QString sequence(this->getSequence());
-  return sequence.replace(QRegExp("[^RNDBCEQZGHILKMFPSTWYVX]"), "");
+  return sequence.replace(QRegExp("[^ARNDBCEQZGHILKMFPSTWYVX]"), "");
 }
 
 pappso::pappso_double
@@ -185,9 +185,13 @@ class DigestionHandler : public pappso::EnzymeProductInterface
   public:
   void
   setPeptide(std::int8_t sequence_database_id,
-             const pappso::ProteinSp &protein_sp, bool is_decoy,
-             const QString &peptide, unsigned int start, bool is_nter,
-             unsigned int missed_cleavage_number, bool semi_enzyme) override
+             const pappso::ProteinSp &protein_sp,
+             bool is_decoy,
+             const QString &peptide,
+             unsigned int start,
+             bool is_nter,
+             unsigned int missed_cleavage_number,
+             bool semi_enzyme) override
   {
     _peptide_list.append(peptide);
   };