write FDR in ODS file as percentage, compute peptide FDR on all proteins

src/core/identificationgroup.cpp

@@ -93,11 +93,10 @@ IdentificationGroup::countPeptideMassSample(ValidationState state) const
   std::vector<std::size_t> count_peptide_mass_sample;
   for(auto &p_protein_match : _protein_match_list)
     {
-      if(p_protein_match->getValidationState() >= state)
-        {
-          p_protein_match->countPeptideMassSample(count_peptide_mass_sample,
-                                                  state);
-        }
+      // if(p_protein_match->getValidationState() >= state)
+      // {
+      p_protein_match->countPeptideMassSample(count_peptide_mass_sample, state);
+      // }
     }
   std::sort(count_peptide_mass_sample.begin(), count_peptide_mass_sample.end());
   auto last = std::unique(count_peptide_mass_sample.begin(),
@@ -113,11 +112,11 @@ IdentificationGroup::countDecoyPeptideMassSample(ValidationState state) const
     {
       if(p_protein_match->getProteinXtpSp().get()->isDecoy())
         {
-          if(p_protein_match->getValidationState() >= state)
-            {
-              p_protein_match->countPeptideMassSample(count_peptide_mass_sample,
-                                                      state);
-            }
+          // if(p_protein_match->getValidationState() >= state)
+          //  {
+          p_protein_match->countPeptideMassSample(count_peptide_mass_sample,
+                                                  state);
+          //}
         }
     }
   std::sort(count_peptide_mass_sample.begin(), count_peptide_mass_sample.end());

src/output/ods/groupingsheet.cpp

@@ -73,8 +73,8 @@ GroupingSheet::writeIdentificationGroup(IdentificationGroup *p_ident)
   //_p_writer->writeCell(p_ident->countSequence(ValidationState::grouped));
   _p_writer->writeCell(
     p_ident->countPeptideMassSample(ValidationState::grouped));
-  _p_writer->writeCell(p_ident->getProteinFdr(ValidationState::valid));
-  _p_writer->writeCell(p_ident->getPeptideMassFdr(ValidationState::valid));
+  _p_writer->writeCellPercentage(p_ident->getProteinFdr(ValidationState::valid));
+  _p_writer->writeCellPercentage(p_ident->getPeptideMassFdr(ValidationState::valid));
 }