first fix for issue #23

src/core/identification_sources/identificationdatasource.h

@@ -42,7 +42,7 @@ class IdentificationDataSource
   public:
   IdentificationDataSource(const QString resource_name);
   IdentificationDataSource(const IdentificationDataSource &other);
-  ~IdentificationDataSource();
+  virtual ~IdentificationDataSource();
 
   PeptideEvidenceStore &getPeptideEvidenceStore();
   const PeptideEvidenceStore &getPeptideEvidenceStore() const;

src/utils/identificationdatasourcestore.cpp

@@ -50,6 +50,7 @@ IdentificationDataSourceSp
 IdentificationDataSourceStore::getInstance(const QString &location,
                                            IdentificationEngine engine)
 {
+    //TODO file format read needs a fix
   qDebug() << "IdentificationDataSourceStore::getInstance begin " << location;
   std::map<QString, IdentificationDataSourceSp>::iterator it =
     _map_identification_data_sources.find(location);
@@ -75,11 +76,13 @@ IdentificationDataSourceStore::getInstance(const QString &location,
       else if(ext.toLower() == "pep")
         {
           // pep xml file
-          p_identfile = std::make_shared<IdentificationPwizFile>(location_file);
+          // p_identfile =
+          // std::make_shared<IdentificationPwizFile>(location_file);
         }
       else
         {
-          //p_identfile = std::make_shared<IdentificationPwizFile>(location_file);
+          // p_identfile =
+          // std::make_shared<IdentificationPwizFile>(location_file);
         }
       if(p_identfile == nullptr)
         {
@@ -123,7 +126,7 @@ IdentificationDataSourceStore::getInstance(const QString &location)
       QString ext = location_file.completeSuffix();
       // QString sample_name = location_file.baseName();
       IdentificationDataSourceSp p_identfile = nullptr;
-      if(ext.toLower() == "xml")
+      if((ext.toLower() == "xml") || (ext.toLower() == ".d.xml"))
         {
           // X!Tandem result file
           p_identfile =
@@ -144,8 +147,8 @@ IdentificationDataSourceStore::getInstance(const QString &location)
       else if(ext.toLower() == "pepxml")
         {
           // pep xml file
-          p_identfile =
-            std::make_shared<IdentificationPepXmlFile>(location_file);
+          // p_identfile =
+          //  std::make_shared<IdentificationPepXmlFile>(location_file);
         }
       else if(ext.toLower() == "dat")
         {
@@ -155,7 +158,8 @@ IdentificationDataSourceStore::getInstance(const QString &location)
         }
       else
         {
-          p_identfile = std::make_shared<IdentificationPwizFile>(location_file);
+          // p_identfile =
+          // std::make_shared<IdentificationPwizFile>(location_file);
         }
       if(p_identfile == nullptr)
         {

src/utils/identificationdatasourcestore.h

@@ -30,8 +30,7 @@
  *implementation
  ******************************************************************************/
 
-#ifndef IDENTIFICATIONDATASOURCESTORE_H
-#define IDENTIFICATIONDATASOURCESTORE_H
+#pragma once
 
 #include <map>
 #include <set>
@@ -54,5 +53,3 @@ class IdentificationDataSourceStore
   std::map<QString, IdentificationDataSourceSp>
     _map_identification_data_sources;
 };
-
-#endif // IDENTIFICATIONDATASOURCESTORE_H