important bug fix : no tims preset does not mean that tandem preset file is wrong

src/core/tandem_run/tandembatchprocess.cpp

@@ -28,6 +28,7 @@
 #include "tandembatchprocess.h"
 #include <QProcess>
 #include <pappsomspp/pappsoexception.h>
+#include <pappsomspp/exception/exceptionnotfound.h>
 #include <QFileInfo>
 #include <QDebug>
 #include <QTemporaryDir>
@@ -182,8 +183,17 @@ TandemBatchProcess::run()
     QString("%1").arg(_tandem_run_batch._number_of_threads));
   new_parameter_file.setTandemParameters(new_param);
 
-  m_centroid_timstof_option =
-    new_param.getValue("spectrum, timstof MS2 centroid parameters");
+  try
+    {
+      m_centroid_timstof_option =
+        new_param.getValue("spectrum, timstof MS2 centroid parameters");
+    }
+  catch(pappso::ExceptionNotFound &error)
+    {
+      // if centroid parameters are not in preset :
+      // no error has to be sent, this is a normal preset
+      m_centroid_timstof_option = "";
+    }
 
   prepareXmlDatabaseFile();
 
@@ -281,7 +291,8 @@ TandemBatchProcess::writeXmlInputFile(QXmlStreamWriter *p_out,
   p_out->writeAttribute("label", "output, path");
   if(mz_file_info.completeSuffix() == "tdf")
     {
-      QString output_name = QFileInfo(mz_file_info.absoluteDir().dirName()).baseName();
+      QString output_name =
+        QFileInfo(mz_file_info.absoluteDir().dirName()).baseName();
       p_out->writeCharacters(QString("%1/%2.xml")
                                .arg(_tandem_run_batch._output_directory)
                                .arg(output_name));