change tandemwrapper filter to correctTDF and Triangle

src/core/msrun.cpp

@@ -42,6 +42,9 @@
 #include <pappsomspp/exception/exceptionnotimplemented.h>
 #include <pappsomspp/msrun/private/timsmsrunreaderms2.h>
 #include <pappsomspp/processing/filters/filterpseudocentroid.h>
+#include <pappsomspp/processing/filters/filtertdfcorrectpeak.h>
+#include <pappsomspp/processing/filters/filtertriangle.h>
+#include <pappsomspp/precision.h>
 #include "peptideevidence.h"
 #include "alignmentgroup.h"
 
@@ -128,14 +131,21 @@ MsRun::setMsRunReaderSp(QString ms_run_file)
                   _msrun_reader_sp.get());
               if(tims2_reader != nullptr)
                 {
-                  qDebug() << m_centroidOptions;
                   QStringList option_list = m_centroidOptions.split(" ");
-                  std::shared_ptr<pappso::FilterPseudoCentroid> ms2filter =
-                    std::make_shared<pappso::FilterPseudoCentroid>(
-                      option_list.at(0).toDouble(),
-                      option_list.at(1).toDouble(),
-                      option_list.at(2).toDouble(),
-                      option_list.at(3).toDouble());
+
+                  std::shared_ptr<pappso::FilterSuite> ms2filter = std::make_shared<pappso::FilterSuite>();
+//                   ms2filter.get()->push_back(
+//                     std::make_shared<pappso::FilterPseudoCentroid>(
+//                       option_list.at(0).toDouble(),
+//                       option_list.at(1).toDouble(),
+//                       option_list.at(2).toDouble(),
+//                       option_list.at(3).toDouble()));
+                  std::shared_ptr<pappso::FilterTriangle> triangle = std::make_shared<pappso::FilterTriangle>();
+                  triangle.get()->setTriangleSlope(50,0.02);
+                  
+                  ms2filter.get()->push_back(triangle);
+                  ms2filter.get()->push_back(
+                    std::make_shared<pappso::FilterCorrectTdfPeaks>(pappso::PrecisionFactory::getDaltonInstance(0.02)));
 
                   tims2_reader->setMs2FilterCstSPtr(ms2filter);
                   qDebug() << m_centroidOptions;