proteinxtp.cpp

/*******************************************************************************
* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
*
* This file is part of XTPcpp.
*
*     XTPcpp is free software: you can redistribute it and/or modify
*     it under the terms of the GNU General Public License as published by
*     the Free Software Foundation, either version 3 of the License, or
*     (at your option) any later version.
*
*     XTPcpp is distributed in the hope that it will be useful,
*     but WITHOUT ANY WARRANTY; without even the implied warranty of
*     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
*     GNU General Public License for more details.
*
*     You should have received a copy of the GNU General Public License
*     along with XTPcpp.  If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
*     Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
******************************************************************************/

#include "proteinxtp.h"

ProteinXtp::ProteinXtp():pappso::Protein()
{

}

ProteinXtp::ProteinXtp(const ProteinXtp& other):pappso::Protein(other)
{
    _is_decoy=other._is_decoy;
    _is_contaminant=other._is_contaminant;
    _p_sequence_database = other._p_sequence_database;
}

ProteinXtp::~ProteinXtp()
{

}

bool ProteinXtp::operator==(const ProteinXtp& other) const
{
    return pappso::Protein::operator==(other);
}

ProteinXtpSp ProteinXtp::makeProteinXtpSp() const {
    return std::make_shared<ProteinXtp>(*this);
}


void ProteinXtp::setIsContaminant(bool conta) {
    _is_contaminant = conta;
}
void ProteinXtp::setIsDecoy(bool conta) {
    _is_decoy = conta;
}
bool ProteinXtp::isContaminant() const {
    return _is_contaminant;
}
bool ProteinXtp::isDecoy() const {
    return _is_decoy;
}