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Created with Raphaël 2.2.021Oct1Apr28Mar271413108657Feb630Jan29272322212019181710863212Dec113229Nov2619161513875131Oct30282524430Sep27251918161429Aug282624232222Jul18171612109854328Jun2524232120171413730May292418138730Apr2322191520Feb141312111087430Jan1610Oct18Sep23Aug2110Jul22Jun8765430May2925242318161411Apr629Mar26986128Feb2721201716151413109876327Jan26253221Dec207Nov429Sep2827262320161230Aug25Jul2120430Jun29242321201715109829May231312111085432129Apr2827262322212019181514131228Mar232218new debian changelog, cmake file updatednew version number 3.3.2 and new name Myosine Chargéelatest libodstream and libproteomicsvg versionsget_RT renamed in getRetentionTimeInMinutesxtandempipeline (3.3.1-44.1) wheezyphospho stats tab added in ods phospho reportxtandempipeline (3.3.1-44) wheezyproticdbml output corrected for phosphopeptidesenforcing multithread with synchronized interprocess functionsmove phospho_mass to the general Utils classxtandempipeline (3.3.1-43) wheezydisplay the real peptide sequence attributed to a protein (with L or I)Merge branch 'master' of ssh://git.renater.fr:2222/xtandempipelinework on the latex compilation process to produce HTML outputwarning message to avoid function duplicationODS reports now has a special tab containing informations about the X!TandemPipeline project (settings, version numbers...)new ODS table sheet to display the number of specific and specific unique peptides by MS samplesnew function to get number of unique peptide sequence by MS samplejavadoc addednew function to get the number of specific unique peptide sequence for a subgroup in a group by MS samplenew command to convert svg to pngxtandempipeline (3.3.1-42) wheezyactually writes the number of spectrum in a subgroup (and not a group, thanks to Alain Guillot)indentation and new function to count total number of spectrum by sampleignore text file with ~ (temporary files)xtandempipeline (3.3.1-41) wheezyMassChroQ ML file is fully adapted to phospho mode (exhaustiv list of peptides and proteins)a lot of work to factorise numbering code for phospho and other modesregexp to find X!Tandem version is now case insensitivemasschroqml file now contains phosphopeptide ids in the phospho moderemoving unneeded image filesthe SVG to PDF convertion is now made directly by cmakenew way to write phosphopeptide id : group+subgroup. To have an information about the phosphoislandusing the real C12 C13 mass difference to compute isotope massesMaximal replaced by Maximumnew ODS sheet to write X!TandemPipeline parametersxtandempipeline (3.3.1-40) wheezyactually writes the model to the temporary condor directoryadd test to check that input X!Tandem files referenced in the general input file existsxtandempipeline (3.3.1-38) wheezy