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Created with Raphaël 2.2.06Feb30Jan29272322212019181710863212Dec113229Nov2619161513875131Oct30282524430Sep27251918161429Aug282624232222Jul18171612109854328Jun2524232120171413730May292418138730Apr2322191520Feb141312111087430Jan1610Oct18Sep23Aug2110Jul22Jun8765430May2925242318161411Apr629Mar26986128Feb2721201716151413109876327Jan26253221Dec207Nov429Sep2827262320161230Aug25Jul2120430Jun29242321201715109829May231312111085432129Apr2827262322212019181514131228Mar232218the SVG to PDF convertion is now made directly by cmakenew way to write phosphopeptide id : group+subgroup. To have an information about the phosphoislandusing the real C12 C13 mass difference to compute isotope massesMaximal replaced by Maximumnew ODS sheet to write X!TandemPipeline parametersxtandempipeline (3.3.1-40) wheezyactually writes the model to the temporary condor directoryadd test to check that input X!Tandem files referenced in the general input file existsxtandempipeline (3.3.1-38) wheezytries to launch condor jobs with the number of cpus requested in X!Tandem modelvariable renamed to identify swtList easilyxtandempipeline (3.3.1-37) wheezyfix adding mzXml several timesanalyse changed in analyzewrong filter removed reading Xtandem filesoriginal documentation from the gpm taken into accountxml xtandem files written with XML methodsfix mhplus massget_hash_sample_scan_cle deprecated function completely removedhandler fixeslist of ignored X!Tandem parameterscorrection on new xml handlersclose output streambetter X!Tandem param writerall xml sax handler rewritednew handler to parse X!Tandem model filesChange default mhplus precision from float to doublecheck precursor mass OKmore logger messagesbetter saxbase handler, loading X!Tandem identification with new handlerpercursor m/z checknew function to get observed m/z and delta m/zmhplus mass and onemillion values addednew SAX Handler to read Xtandem result file@Override and sendData addedmodify parse_file function to report embedded sax exceptionscreenshot update for the documentationfiex little typo in doc (thanks to Céline Henryupdating documentation title and versionxtandempipeline (3.3.1-35) wheezy
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