Commits · de91673691d765c57e29d00ce2eb338646e168d2 · PAPPSO / i2MassChroQ · GitLab

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A compter du 1er avril, attention à vos pipelines : Nouvelles limitations de Docker Hub

Feb 05, 2019
- indentation · de916736
  Langella Olivier authored 6 years ago
  
  de916736
Feb 02, 2019
- WIP: adapt code to the new pappsoMS++ code policy · 1d45b982
  Langella Olivier authored 6 years ago
  
  1d45b982
Jan 28, 2019
- checking MS run file path completed · 2ff2145d
  Langella Olivier authored 6 years ago
  
  2ff2145d
Jan 11, 2019
- check for write permission on fasta files : this is odd, nut required by X\!Tandem · ba93c240
  Langella Olivier authored 6 years ago
  
  ba93c240
Dec 13, 2018
- accept empty labels for unmodified peptides · 3252eb6b
  Langella Olivier authored 6 years ago
  
  3252eb6b
Nov 09, 2018
- display separately fdr on psm and on peptides · 3862ecde
  Langella Olivier authored 6 years ago
  
  3862ecde
Nov 02, 2018
- celenocysteine added · 753e03ee
  Langella Olivier authored 6 years ago
  
  753e03ee
- fix forgotten ALanine · 4b157024
  Langella Olivier authored 6 years ago
  
  4b157024
Oct 30, 2018
- write FDR in ODS file as percentage, compute peptide FDR on all proteins · 444110bc
  Langella Olivier authored 6 years ago
  
  444110bc
Oct 29, 2018
- count peptide directly without protein validity · 2b860768
  Langella Olivier authored 6 years ago
  
  2b860768
- fix temporary directory for condor · 79b25974
  Langella Olivier authored 6 years ago
  
  79b25974
Oct 19, 2018
- bug fix on protein Evalue computation found by T. Balliau · 3e9ff07e
  Langella Olivier authored 6 years ago
  
  3e9ff07e
Oct 18, 2018
- NSAF indice handles labeling methods · ee09dcc4
  Langella Olivier authored 6 years ago
  
  ee09dcc4
- countPeptideMassCharge is able to count distinct labels · 00899292
  Langella Olivier authored 6 years ago
  
  00899292
- countSequenceLi is able to count disctinct labels · 07a809a3
  Langella Olivier authored 6 years ago
  
  07a809a3
- countSampleScan is able to count dictinctive labels · 8ea82da7
  Langella Olivier authored 6 years ago
  
  8ea82da7
Oct 12, 2018
- check temporary directory for HTCondor · ca9fc9e6
  Langella Olivier authored 6 years ago
  
  ca9fc9e6
- checking tandem.exe installation · 9f1d4baa
  Langella Olivier authored 6 years ago
  
  9f1d4baa
Oct 02, 2018
- find MS run file on basename or samplename. · 8bfbe7cf
  Langella Olivier authored 6 years ago
  
  get sample name from Mascot dat parameters.
  8bfbe7cf
- indentation · f6af7221
  Langella Olivier authored 6 years ago
  
  f6af7221
Sep 12, 2018
- new function to free msrun reader shared pointer · 067ac049
  Langella Olivier authored 6 years ago
  
  067ac049
Sep 03, 2018
- indentation with clang format v6.0 · 49c90b0a
  Langella Olivier authored 6 years ago
  
  49c90b0a
- indentation and really make sure that we look for MSrun in the right place · b62b91cf
  Langella Olivier authored 6 years ago
  
  b62b91cf
Aug 31, 2018
- xtpcpp (0.2.21-3) stretch · efbe7260
  Langella Olivier authored 6 years ago
  
  xtpcpp_0.2.21-3
  
  efbe7260
Aug 28, 2018
- new trick to find a suitable msrun file · 6df01ab3
  Langella Olivier authored 6 years ago
  
  6df01ab3
Jul 12, 2018
- write TIC in ODS file · 02724771
  Langella Olivier authored 6 years ago
  
  02724771
- compute TIC on spectrum ms levels · bd1467f7
  Langella Olivier authored 6 years ago
  
  bd1467f7
Jul 09, 2018
- pepxml : take into account buggy engines that do not use correctly protein... · eccbbcd0
  Langella Olivier authored 6 years ago
  
  pepxml : take into account buggy engines that do not use correctly protein accession and description
  eccbbcd0
Jun 21, 2018
- Peptide prophet column display · 6b256679
  Langella Olivier authored 6 years ago
  
  6b256679
- xic extractor is now embedded in msrun · 7ea294d8
  Langella Olivier authored 6 years ago
  
  7ea294d8
Jun 20, 2018
- new try catch blocks to ensure condor process · f977f07c
  Langella Olivier authored 6 years ago
  
  f977f07c
- set peptide mass using the precursor neutral mass · a9a57d51
  Langella Olivier authored 6 years ago
  
  a9a57d51
Jun 19, 2018
- new peptide column to display search engine · eaeb228e
  Langella Olivier authored 6 years ago
  
  eaeb228e
- new: store identification engine in peptide evidence · 86b2c9df
  Langella Olivier authored 6 years ago
  
  86b2c9df
- WIP: parsing pep xml files · 53a96c0a
  Langella Olivier authored 6 years ago
  
  53a96c0a
- sort AA modifications to write the same label every time · 7d766e00
  Langella Olivier authored 6 years ago
  
  7d766e00
Jun 16, 2018
- new files to handle pep xml files · 43709dfe
  Langella Olivier authored 6 years ago
  
  43709dfe
May 31, 2018
- MSrun statistics · 478fcab0
  Langella Olivier authored 6 years ago
  
  478fcab0
May 08, 2018
- using new xic extractor API · cd828929
  Langella Olivier authored 6 years ago
  
  cd828929
May 03, 2018
- normalized spectral abundance factor done · a38f4016
  Langella Olivier authored 6 years ago
  
  a38f4016