Commits · 968a5449857450d7262ea4e116c3710956c06e8a · PAPPSO / i2MassChroQ · GitLab

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Mar 13, 2014
- xtandempipeline (3.3.1-43) wheezy · 968a5449
  Olivier Langella authored 11 years ago
  
  968a5449
- display the real peptide sequence attributed to a protein (with L or I) · 70bdf199
  Olivier Langella authored 11 years ago
  
  70bdf199
Mar 10, 2014
- Merge branch 'master' of ssh://git.renater.fr:2222/xtandempipeline · 96af181c
  Olivier Langella authored 11 years ago
  
  code written from home merged
  96af181c
- work on the latex compilation process to produce HTML output · 888edb17
  Olivier Langella authored 11 years ago
  
  888edb17
- warning message to avoid function duplication · 4a236474
  Olivier Langella authored 11 years ago
  
  4a236474
Mar 08, 2014
- ODS reports now has a special tab containing informations about the... · 2dafd31c
  Olivier Langella authored 11 years ago
  
  ODS reports now has a special tab containing informations about the X!TandemPipeline project (settings, version numbers...) new output to compar specific and specific unique sequences between samples
  2dafd31c
- new ODS table sheet to display the number of specific and specific unique peptides by MS samples · 6a51244c
  Olivier Langella authored 11 years ago
  
  6a51244c
- new function to get number of unique peptide sequence by MS sample · cba3ec24
  Olivier Langella authored 11 years ago
  
  cba3ec24
- javadoc added · fe8edaa8
  Olivier Langella authored 11 years ago
  
  fe8edaa8
- new function to get the number of specific unique peptide sequence for a... · e063ffda
  Olivier Langella authored 11 years ago
  
  new function to get the number of specific unique peptide sequence for a subgroup in a group by MS sample
  e063ffda
Mar 06, 2014
- new command to convert svg to png · f71835e5
  Olivier Langella authored 11 years ago
  
  f71835e5
Mar 05, 2014
- xtandempipeline (3.3.1-42) wheezy · 3869fcb6
  Olivier Langella authored 11 years ago
  
  3869fcb6
- actually writes the number of spectrum in a subgroup (and not a group, thanks to Alain Guillot) · 5ebbf66c
  Olivier Langella authored 11 years ago
  
  5ebbf66c
- indentation and new function to count total number of spectrum by sample · 347a025d
  Olivier Langella authored 11 years ago
  
  347a025d
- ignore text file with ~ (temporary files) · 2c446b7f
  Olivier Langella authored 11 years ago
  
  2c446b7f
Feb 07, 2014
- xtandempipeline (3.3.1-41) wheezy · bebe8add
  Olivier Langella authored 11 years ago
  
  bebe8add
- MassChroQ ML file is fully adapted to phospho mode (exhaustiv list of peptides and proteins) · 9a0414e2
  Olivier Langella authored 11 years ago
  
  9a0414e2
Feb 06, 2014
- a lot of work to factorise numbering code for phospho and other modes · 149d9e3f
  Olivier Langella authored 11 years ago
  
  149d9e3f
- regexp to find X!Tandem version is now case insensitive · e37205fe
  Olivier Langella authored 11 years ago
  
  e37205fe
- masschroqml file now contains phosphopeptide ids in the phospho mode · 5857ea14
  Olivier Langella authored 11 years ago
  
  5857ea14
- removing unneeded image files · a5dc4d2e
  Olivier Langella authored 11 years ago
  
  a5dc4d2e
- the SVG to PDF convertion is now made directly by cmake · a7497ca0
  Olivier Langella authored 11 years ago
  
  a7497ca0
- new way to write phosphopeptide id : group+subgroup. To have an information about the phosphoisland · 0a7d82c9
  Olivier Langella authored 11 years ago
  
  0a7d82c9
Jan 30, 2014
- using the real C12 C13 mass difference to compute isotope masses · e38fed9d
  Olivier Langella authored 11 years ago
  
  e38fed9d
Jan 29, 2014
- Maximal replaced by Maximum · 8a764407
  Olivier Langella authored 11 years ago
  
  8a764407
- new ODS sheet to write X!TandemPipeline parameters · f6aa5fd5
  Olivier Langella authored 11 years ago
  
  f6aa5fd5
Jan 27, 2014
- xtandempipeline (3.3.1-40) wheezy · 63620987
  Olivier Langella authored 11 years ago
  
  63620987
- actually writes the model to the temporary condor directory · f6dce2c9
  Olivier Langella authored 11 years ago
  
  f6dce2c9
- add test to check that input X!Tandem files referenced in the general input file exists · 31ea202d
  Olivier Langella authored 11 years ago
  
  31ea202d
- xtandempipeline (3.3.1-38) wheezy · 41cd99e6
  Olivier Langella authored 11 years ago
  
  41cd99e6
Jan 23, 2014
- tries to launch condor jobs with the number of cpus requested in X!Tandem model · ad20e456
  Olivier Langella authored 11 years ago
  
  ad20e456
- variable renamed to identify swtList easily · 26e595a7
  Olivier Langella authored 11 years ago
  
  26e595a7
Jan 22, 2014
- xtandempipeline (3.3.1-37) wheezy · c3dd6dd8
  Olivier Langella authored 11 years ago
  
  c3dd6dd8
- fix adding mzXml several times · c380be6e
  Olivier Langella authored 11 years ago
  
  c380be6e
- analyse changed in analyze · a87644ec
  Olivier Langella authored 11 years ago
  
  a87644ec
- wrong filter removed reading Xtandem files · 165cc02d
  Olivier Langella authored 11 years ago
  
  deviation computation OK
  165cc02d
- original documentation from the gpm taken into account · 1901a862
  Olivier Langella authored 11 years ago
  
  1901a862
Jan 21, 2014
- xml xtandem files written with XML methods · 8e6d2b96
  Olivier Langella authored 11 years ago
  
  8e6d2b96
- fix mhplus mass · 35f4cfdc
  Olivier Langella authored 11 years ago
  
  35f4cfdc
- get_hash_sample_scan_cle deprecated function completely removed · 45ee698a
  Olivier Langella authored 11 years ago
  
  45ee698a