Commits · 60bbae60696bdf9d2bffb4ceec944a17ba74ebb9 · PAPPSO / i2MassChroQ · GitLab

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Oct 02, 2019
- Correct output and remove residu potential modif 1, 2 · 60bbae60
  Renne Thomas authored 5 years ago
  
  60bbae60
Aug 06, 2019
- reads and writes contaminant removal mode in xpip files · 44133390
  Langella Olivier authored 5 years ago
  
  44133390
Aug 05, 2019
- use of contaminant removal mode in projects, read and write new contaminant... · 29e445f6
  Langella Olivier authored 5 years ago
  
  use of contaminant removal mode in projects, read and write new contaminant removal mode from XPIP files
  29e445f6
Jul 29, 2019
- forgotten evalue return · b87ced60
  Langella Olivier authored 5 years ago
  
  b87ced60
Jun 12, 2019
- stronger tandem parameter file parser · 8a796ad0
  Langella Olivier authored 5 years ago
  
  8a796ad0
Apr 30, 2019
- WIP: adapting xtpcpp to new PAPPSOms++ library · 62ead640
  Langella Olivier authored 6 years ago
  
  62ead640
Mar 22, 2019
- new filter on peprepro seems OK · 67195bf0
  Langella Olivier authored 6 years ago
  
  67195bf0
Mar 21, 2019
- mutation support · 29591281
  Langella Olivier authored 6 years ago
  
  29591281
Feb 05, 2019
- new debug messages · d3cf1445
  Langella Olivier authored 6 years ago
  
  d3cf1445
- indentation · de916736
  Langella Olivier authored 6 years ago
  
  de916736
Feb 02, 2019
- WIP: adapt code to the new pappsoMS++ code policy · 1d45b982
  Langella Olivier authored 6 years ago
  
  1d45b982
Dec 07, 2018
- wait for spectrum loader thread · 2c853d69
  Langella Olivier authored 6 years ago
  
  2c853d69
Nov 30, 2018
- count sample scan and not peptide · 044ff91c
  Langella Olivier authored 6 years ago
  
  044ff91c
Nov 27, 2018
- take only first spectrum PSM in mascot parser · b8bbdcdc
  Langella Olivier authored 6 years ago
  
  b8bbdcdc
Nov 26, 2018
- work on the mascot dat parser · 36981c37
  Langella Olivier authored 6 years ago
  
  36981c37
Nov 02, 2018
- fix start position in mzidentml files · 010adcba
  Langella Olivier authored 6 years ago
  
  010adcba
Oct 30, 2018
- fixed mascot parser for single fasta file · 160db657
  Langella Olivier authored 6 years ago
  
  160db657
Oct 03, 2018
- some missing information to parse in a near futur · e51036c5
  Langella Olivier authored 6 years ago
  
  e51036c5
- grab retention time from msgf+ mzidentml files · afa06946
  Langella Olivier authored 6 years ago
  
  afa06946
- grab specific informations from MS-GF+ mzidentML files · 6c8d555c
  Langella Olivier authored 6 years ago
  
  6c8d555c
- find psi mod accession with unimod accession · 8fbf7d14
  Langella Olivier authored 6 years ago
  
  8fbf7d14
- fix adding modification at position -1 in pwiz reader · 0ad05745
  Langella Olivier authored 6 years ago
  
  0ad05745
Oct 02, 2018
- find MS run file on basename or samplename. · 8bfbe7cf
  Langella Olivier authored 6 years ago
  
  get sample name from Mascot dat parameters.
  8bfbe7cf
- grab mascot parameters · ef77225c
  Langella Olivier authored 6 years ago
  
  ef77225c
- indentation · f6af7221
  Langella Olivier authored 6 years ago
  
  f6af7221
- more reliable mascot parser · 6f5cfa9d
  Langella Olivier authored 6 years ago
  
  6f5cfa9d
Sep 03, 2018
- indentation with clang format v6.0 · 49c90b0a
  Langella Olivier authored 6 years ago
  
  49c90b0a
Jul 09, 2018
- mzidentml: get protein description if cvParam is used · 9cc330cb
  Langella Olivier authored 6 years ago
  
  9cc330cb
- mzidentml : circumvent buggy spectrum id · 01a1fa8e
  Langella Olivier authored 6 years ago
  
  01a1fa8e
- pepxml : take into account buggy engines that do not use correctly protein... · eccbbcd0
  Langella Olivier authored 6 years ago
  
  pepxml : take into account buggy engines that do not use correctly protein accession and description
  eccbbcd0
Jun 21, 2018
- store msgf isotope error · 0e6edafa
  Langella Olivier authored 6 years ago
  
  0e6edafa
- xpip reader backward compatibility · c1317b80
  Langella Olivier authored 6 years ago
  
  c1317b80
- better pepxml reader for omssa, comet, msgf+ identifications · 15dddcdf
  Langella Olivier authored 6 years ago
  
  15dddcdf
Jun 20, 2018
- xtpcpp is able to load multiple search engine in mzidentml · 59cc11bc
  Langella Olivier authored 6 years ago
  
  59cc11bc
- set peptide mass using the precursor neutral mass · a9a57d51
  Langella Olivier authored 6 years ago
  
  a9a57d51
Jun 19, 2018
- new peptide column to display search engine · eaeb228e
  Langella Olivier authored 6 years ago
  
  eaeb228e
- WIP: better pep xml support · a7057bfd
  Langella Olivier authored 6 years ago
  
  a7057bfd
- new: store identification engine in peptide evidence · 86b2c9df
  Langella Olivier authored 6 years ago
  
  86b2c9df
- WIP: parsing pep xml files · 53a96c0a
  Langella Olivier authored 6 years ago
  
  53a96c0a
Jun 18, 2018
- WIP : parsing pep XML files · ef2478b4
  Langella Olivier authored 6 years ago
  
  ef2478b4