Commits · 5dcefe1839db8d4333dd21cd76ee290b609341f0 · PAPPSO / i2MassChroQ · GitLab

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Apr 30, 2019
- WIP: adapting xtpcpp to new PAPPSOms++ library · 5dcefe18
  Langella Olivier authored 6 years ago
  
  5dcefe18
Apr 16, 2019
- give fasta file aboslute path in the error message · 4e2205b7
  Langella Olivier authored 6 years ago
  
  4e2205b7
Mar 22, 2019
- new filter on peprepro seems OK · 67195bf0
  Langella Olivier authored 6 years ago
  
  67195bf0
- pragma once · 17cafb2f
  Langella Olivier authored 6 years ago
  
  17cafb2f
Mar 21, 2019
- new filter parameter for peprepro · 97777e6a
  Langella Olivier authored 6 years ago
  
  97777e6a
Mar 16, 2019
- fix nter flanking region · f6e610fd
  Langella Olivier authored 6 years ago
  
  f6e610fd
- nter and cter flanking region in ODS export · 18eb0327
  Langella Olivier authored 6 years ago
  
  18eb0327
- beter nter flanking · 00e380f4
  Langella Olivier authored 6 years ago
  
  00e380f4
- get flanking region works · f37bbda4
  Langella Olivier authored 6 years ago
  
  f37bbda4
- remove obsolete function · f48cf965
  Langella Olivier authored 6 years ago
  
  f48cf965
Feb 14, 2019
- option to use buffered xic extractor · e5d12a9b
  Langella Olivier authored 6 years ago
  
  e5d12a9b
Feb 05, 2019
- new debug messages · d3cf1445
  Langella Olivier authored 6 years ago
  
  d3cf1445
- indentation · de916736
  Langella Olivier authored 6 years ago
  
  de916736
Feb 02, 2019
- WIP: adapt code to the new pappsoMS++ code policy · 1d45b982
  Langella Olivier authored 6 years ago
  
  1d45b982
Jan 28, 2019
- checking MS run file path completed · 2ff2145d
  Langella Olivier authored 6 years ago
  
  2ff2145d
Jan 11, 2019
- check for write permission on fasta files : this is odd, nut required by X\!Tandem · ba93c240
  Langella Olivier authored 6 years ago
  
  ba93c240
Dec 13, 2018
- accept empty labels for unmodified peptides · 3252eb6b
  Langella Olivier authored 6 years ago
  
  3252eb6b
Nov 09, 2018
- display separately fdr on psm and on peptides · 3862ecde
  Langella Olivier authored 6 years ago
  
  3862ecde
Nov 02, 2018
- celenocysteine added · 753e03ee
  Langella Olivier authored 6 years ago
  
  753e03ee
- fix forgotten ALanine · 4b157024
  Langella Olivier authored 6 years ago
  
  4b157024
Oct 30, 2018
- write FDR in ODS file as percentage, compute peptide FDR on all proteins · 444110bc
  Langella Olivier authored 6 years ago
  
  444110bc
Oct 29, 2018
- count peptide directly without protein validity · 2b860768
  Langella Olivier authored 6 years ago
  
  2b860768
- fix temporary directory for condor · 79b25974
  Langella Olivier authored 6 years ago
  
  79b25974
Oct 19, 2018
- bug fix on protein Evalue computation found by T. Balliau · 3e9ff07e
  Langella Olivier authored 6 years ago
  
  3e9ff07e
Oct 18, 2018
- NSAF indice handles labeling methods · ee09dcc4
  Langella Olivier authored 6 years ago
  
  ee09dcc4
- countPeptideMassCharge is able to count distinct labels · 00899292
  Langella Olivier authored 6 years ago
  
  00899292
- countSequenceLi is able to count disctinct labels · 07a809a3
  Langella Olivier authored 6 years ago
  
  07a809a3
- countSampleScan is able to count dictinctive labels · 8ea82da7
  Langella Olivier authored 6 years ago
  
  8ea82da7
Oct 12, 2018
- check temporary directory for HTCondor · ca9fc9e6
  Langella Olivier authored 6 years ago
  
  ca9fc9e6
- checking tandem.exe installation · 9f1d4baa
  Langella Olivier authored 6 years ago
  
  9f1d4baa
Oct 02, 2018
- find MS run file on basename or samplename. · 8bfbe7cf
  Langella Olivier authored 6 years ago
  
  get sample name from Mascot dat parameters.
  8bfbe7cf
- indentation · f6af7221
  Langella Olivier authored 6 years ago
  
  f6af7221
Sep 12, 2018
- new function to free msrun reader shared pointer · 067ac049
  Langella Olivier authored 6 years ago
  
  067ac049
Sep 03, 2018
- indentation with clang format v6.0 · 49c90b0a
  Langella Olivier authored 6 years ago
  
  49c90b0a
- indentation and really make sure that we look for MSrun in the right place · b62b91cf
  Langella Olivier authored 6 years ago
  
  b62b91cf
Aug 31, 2018
- xtpcpp (0.2.21-3) stretch · efbe7260
  Langella Olivier authored 6 years ago
  
  View commits for tag xtpcpp_0.2.21-3 xtpcpp_0.2.21-3
  
  efbe7260
Aug 28, 2018
- new trick to find a suitable msrun file · 6df01ab3
  Langella Olivier authored 6 years ago
  
  6df01ab3
Jul 12, 2018
- write TIC in ODS file · 02724771
  Langella Olivier authored 6 years ago
  
  02724771
- compute TIC on spectrum ms levels · bd1467f7
  Langella Olivier authored 6 years ago
  
  bd1467f7
Jul 09, 2018
- pepxml : take into account buggy engines that do not use correctly protein... · eccbbcd0
  Langella Olivier authored 6 years ago
  
  pepxml : take into account buggy engines that do not use correctly protein accession and description
  eccbbcd0