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Commit f4f1fdad authored by Langella Olivier's avatar Langella Olivier
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new ui to select decoy proteins

parent f812bb79
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src/gui/project_view/project_view.ui
+ 85
− 6
View file @ f4f1fdad
......@@ -7,7 +7,7 @@
<x>0</x>
<y>0</y>
<width>465</width>
<height>493</height>
<height>533</height>
</rect>
</property>
<property name="windowTitle">
......@@ -24,7 +24,7 @@
<string/>
</property>
<property name="currentIndex">
<number>0</number>
<number>2</number>
</property>
<widget class="QWidget" name="identifications">
<attribute name="title">
......@@ -133,9 +133,39 @@
</widget>
</item>
<item>
<widget class="QGroupBox" name="groupBox">
<layout class="QHBoxLayout" name="horizontalLayout_3">
<item>
<widget class="QRadioButton" name="decoy_database_files_radiobutton">
<property name="toolTip">
<string>select decoy sequences from fasta files</string>
</property>
<property name="text">
<string>database files</string>
</property>
<attribute name="buttonGroup">
<string notr="true">decoy_source_buttongroup</string>
</attribute>
</widget>
</item>
<item>
<widget class="QRadioButton" name="decoy_regexp_radiobutton">
<property name="toolTip">
<string>select decoy sequences based on a regular expression</string>
</property>
<property name="text">
<string>regular expression</string>
</property>
<attribute name="buttonGroup">
<string notr="true">decoy_source_buttongroup</string>
</attribute>
</widget>
</item>
</layout>
</item>
<item>
<widget class="QGroupBox" name="decoy_database_groupbox">
<property name="title">
<string>Decoy database files</string>
<string>Choose decoy database files</string>
</property>
<layout class="QVBoxLayout" name="verticalLayout_3">
<item>
......@@ -169,9 +199,9 @@
</widget>
</item>
<item>
<widget class="QGroupBox" name="groupBox_2">
<widget class="QGroupBox" name="decoy_regexp_groupbox">
<property name="title">
<string>Decoy protein regular expression</string>
<string>Set regular expression to select decoy proteins</string>
</property>
<layout class="QVBoxLayout" name="verticalLayout_4">
<item>
......@@ -181,6 +211,19 @@
</property>
</widget>
</item>
<item>
<spacer name="verticalSpacer">
<property name="orientation">
<enum>Qt::Vertical</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>20</width>
<height>40</height>
</size>
</property>
</spacer>
</item>
</layout>
</widget>
</item>
......@@ -388,10 +431,46 @@
</hint>
</hints>
</connection>
<connection>
<sender>decoy_database_files_radiobutton</sender>
<signal>clicked()</signal>
<receiver>ProjectView</receiver>
<slot>doSelectDecoySource()</slot>
<hints>
<hint type="sourcelabel">
<x>110</x>
<y>184</y>
</hint>
<hint type="destinationlabel">
<x>682</x>
<y>256</y>
</hint>
</hints>
</connection>
<connection>
<sender>decoy_regexp_radiobutton</sender>
<signal>clicked()</signal>
<receiver>ProjectView</receiver>
<slot>doSelectDecoySource()</slot>
<hints>
<hint type="sourcelabel">
<x>326</x>
<y>192</y>
</hint>
<hint type="destinationlabel">
<x>693</x>
<y>239</y>
</hint>
</hints>
</connection>
</connections>
<slots>
<slot>doFdrChanged()</slot>
<slot>doMassPrecisionUnitChanged(QString)</slot>
<slot>doIdentificationsComboboxChanged(int)</slot>
<slot>doSelectDecoySource()</slot>
</slots>
<buttongroups>
<buttongroup name="decoy_source_buttongroup"/>
</buttongroups>
</ui>
src/gui/project_view/projectwindow.cpp
+ 32
− 14
View file @ f4f1fdad
......@@ -155,7 +155,7 @@ void ProjectWindow::connectNewPtmIslandListWindow() {
void ProjectWindow::connectNewProteinListWindow() {
qDebug() << "ProjectWindow::connectNewProteinListWindow begin";
_p_current_protein_list_window = new ProteinListWindow(this);
_protein_list_window_collection.push_back(_p_current_protein_list_window);
qDebug() << "ProjectWindow::connectNewProteinListWindow end";
......@@ -341,23 +341,25 @@ void ProjectWindow::doFdrChanged() {
try {
showWaitingMessage(tr("FDR modifications"));
doDisplayLoadingMessage(tr("tagging decoy proteins"));
QModelIndexList index_list = ui->decoy_database_listview->selectionModel()->selectedIndexes();
if (index_list.size() > 0) {
qDebug() << "ProjectWindow::doFdrChanged index_list.size()=" << index_list.size();
if (ui->decoy_regexp_radiobutton->isChecked()) {
_project_sp.get()->getProteinStore().setRegexpDecoyPattern(ui->decoy_protein_regexp_line_edit->text());
}
else {
_project_sp.get()->getProteinStore().clearDecoys();
for (QModelIndex index :index_list) {
if (index.data(Qt::UserRole).canConvert<FastaFile *>()) {
FastaFile * p_fasta_file = index.data(Qt::UserRole).value<FastaFile *>();
p_fasta_file->setDecoys(_project_sp.get()->getProteinStore());
}
else {
throw pappso::PappsoException(QObject::tr("can not convert to FastaFile index.data().canConvert<FastaFile *>()"));
QModelIndexList index_list = ui->decoy_database_listview->selectionModel()->selectedIndexes();
if (index_list.size() > 0) {
qDebug() << "ProjectWindow::doFdrChanged index_list.size()=" << index_list.size();
for (QModelIndex index :index_list) {
if (index.data(Qt::UserRole).canConvert<FastaFile *>()) {
FastaFile * p_fasta_file = index.data(Qt::UserRole).value<FastaFile *>();
p_fasta_file->setDecoys(_project_sp.get()->getProteinStore());
}
else {
throw pappso::PappsoException(QObject::tr("can not convert to FastaFile index.data().canConvert<FastaFile *>()"));
}
}
}
}
else {
_project_sp.get()->getProteinStore().setRegexpDecoyPattern(ui->decoy_protein_regexp_line_edit->text());
}
doDisplayLoadingMessage(tr("updating filters"));
_project_sp.get()->updateAutomaticFilters(_project_sp.get()->getAutomaticFilterParameters());
......@@ -587,6 +589,8 @@ void ProjectWindow::setProjectSp(ProjectSp project_sp) {
qDebug() << "ProjectWindow::setProjectSp begin" ;
_project_sp = project_sp;
ui->decoy_regexp_radiobutton->setChecked(true);
ui->decoy_database_groupbox->setVisible(false);
qDebug() << "ProjectWindow::setProjectSp begin " << _project_sp.get()->getFastaFileStore().getFastaFileList().size() ;
_fastafile_list = _project_sp.get()->getFastaFileStore().getFastaFileList();
......@@ -782,3 +786,17 @@ void ProjectWindow::openInXicViewer(const PeptideEvidence * p_peptide_evidence)
_p_xic_window->addXic(p_peptide_evidence);
qDebug() << "ProjectWindow::openInXicViewer end";
}
void ProjectWindow::doSelectDecoySource() {
qDebug() << "ProjectWindow::doSelectDecoySource begin";
ui->decoy_database_groupbox->setVisible(false);
ui->decoy_regexp_groupbox->setVisible(false);
if (ui->decoy_database_files_radiobutton->isChecked()) {
ui->decoy_database_groupbox->setVisible(true);
}
else {
ui->decoy_regexp_groupbox->setVisible(true);
}
qDebug() << "ProjectWindow::doSelectDecoySource end";
}
src/gui/project_view/projectwindow.h
+ 1
− 0
View file @ f4f1fdad
......@@ -69,6 +69,7 @@ public slots:
void setDefaultProteinListWindow(ProteinListWindow* p_protein_list_window);
void doAutomaticFilterParametersChanged(AutomaticFilterParameters parameters);
void doFdrChanged();
void doSelectDecoySource();
void doMassPrecisionUnitChanged(QString combo_value);
void doOperationFailed(QString);
void doOperationFinished();
......
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