new interface to handle grouping

src/CMakeLists.txt

@@ -63,6 +63,7 @@ SET(CPP_FILES
   core/identification_sources/identificationdatasource.cpp
   core/identification_sources/identificationxtandemfile.cpp
   files/xpipfile.cpp
+  grouping/groupingexperiment.cpp
   input/xpipsaxhandler.cpp
   utils/peptidestore.cpp
   utils/readspectrum.cpp

src/core/identificationgroup.cpp

@@ -44,6 +44,8 @@ void IdentificationGroup::updateAutomaticFilters(const AutomaticFilterParameters
         p_protein_match->updateAutomaticFilters(automatic_filter_parameters);
     }
 
+    if (_p_grp_experiment != nullptr) {
+    }
    
 }
 void IdentificationGroup::addProteinMatch(ProteinMatch * protein_match) {

src/core/identificationgroup.h

@@ -21,11 +21,11 @@
 *     Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
 ******************************************************************************/
 #include <memory>
-#include <pappsomspp/grouping/grpexperiment.h>
 #include <QFileInfo>
 #include "proteinmatch.h"
 #include <pappsomspp/msrun/msrunid.h>
 
+#include "grouping/groupingexperiment.h"
 
 #ifndef IDENTIFICATIONGROUP_H
 #define IDENTIFICATIONGROUP_H
@@ -50,9 +50,9 @@ public:
     /** @brief validate or invalidate peptides and proteins based automatic filters and manual checks
      * */
     void updateAutomaticFilters(const AutomaticFilterParameters & automatic_filter_parameters);
-
-    pappso::GrpExperiment * _p_grp_experiment= nullptr;
 private :
+    GroupingExperiment * _p_grp_experiment= nullptr;
+
     Project * _p_project;
 
     std::vector<ProteinMatch *> _protein_match_list;

src/grouping/groupingexperiment.cpp

+
+/*******************************************************************************
+* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
+*
+* This file is part of XTPcpp.
+*
+*     XTPcpp is free software: you can redistribute it and/or modify
+*     it under the terms of the GNU General Public License as published by
+*     the Free Software Foundation, either version 3 of the License, or
+*     (at your option) any later version.
+*
+*     XTPcpp is distributed in the hope that it will be useful,
+*     but WITHOUT ANY WARRANTY; without even the implied warranty of
+*     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+*     GNU General Public License for more details.
+*
+*     You should have received a copy of the GNU General Public License
+*     along with XTPcpp.  If not, see <http://www.gnu.org/licenses/>.
+*
+* Contributors:
+*     Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
+******************************************************************************/
+
+#include "groupingexperiment.h"
+
+GroupingExperiment::GroupingExperiment()
+{
+
+}
+
+GroupingExperiment::~GroupingExperiment()
+{
+
+}

src/grouping/groupingexperiment.h

+
+/*******************************************************************************
+* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
+*
+* This file is part of XTPcpp.
+*
+*     XTPcpp is free software: you can redistribute it and/or modify
+*     it under the terms of the GNU General Public License as published by
+*     the Free Software Foundation, either version 3 of the License, or
+*     (at your option) any later version.
+*
+*     XTPcpp is distributed in the hope that it will be useful,
+*     but WITHOUT ANY WARRANTY; without even the implied warranty of
+*     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+*     GNU General Public License for more details.
+*
+*     You should have received a copy of the GNU General Public License
+*     along with XTPcpp.  If not, see <http://www.gnu.org/licenses/>.
+*
+* Contributors:
+*     Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
+******************************************************************************/
+
+
+#ifndef GROUPINGEXPERIMENT_H
+#define GROUPINGEXPERIMENT_H
+
+class GroupingExperiment
+{
+public:
+    GroupingExperiment();
+    ~GroupingExperiment();
+    
+    
+};
+
+#endif // GROUPINGEXPERIMENT_H