new filter on peptide or protein sequence

src/CMakeLists.txt

@@ -27,11 +27,11 @@ SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${Qt5Xml_EXECUTABLE_COMPILE_FLAGS} ${Qt5
 
 
 #sudo apt-get install libpappsomspp-dev
-#FIND_PACKAGE( Pappsomspp REQUIRED )
+FIND_PACKAGE( Pappsomspp REQUIRED )
 # SET (PAPPSOMSPP_DIR  "/home/olivier/eclipse/git/pappsomspp")
- SET (PAPPSOMSPP_DIR  "/home/langella/developpement/git/pappsomspp")
- SET (PAPPSOMSPP_INCLUDE_DIR "${PAPPSOMSPP_DIR}/src")
- SET (PAPPSOMSPP_QT4_LIBRARY "${PAPPSOMSPP_DIR}/cbuild/src/libpappsomspp-qt4.so")
+# SET (PAPPSOMSPP_DIR  "/home/langella/developpement/git/pappsomspp")
+# SET (PAPPSOMSPP_INCLUDE_DIR "${PAPPSOMSPP_DIR}/src")
+# SET (PAPPSOMSPP_QT4_LIBRARY "${PAPPSOMSPP_DIR}/cbuild/src/libpappsomspp-qt4.so")
 
 
 set(CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/cmake_modules)

src/gui/protein_list_view/protein_view.ui

@@ -86,6 +86,16 @@
           <string>group</string>
          </property>
         </item>
+        <item>
+         <property name="text">
+          <string>sequence</string>
+         </property>
+        </item>
+        <item>
+         <property name="text">
+          <string>peptide</string>
+         </property>
+        </item>
        </widget>
       </item>
       <item>

src/gui/protein_list_view/proteintableproxymodel.cpp

@@ -57,6 +57,20 @@ bool ProteinTableProxyModel::filterAcceptsRow(int source_row,
                     }
                 }
             }
+            else if (_search_on == "sequence") {
+                if (!protein_match->getProteinXtpSp().get()->getSequence().contains(_protein_search_string)) {
+                    return false;
+                }
+            }
+            else if (_search_on == "peptide") {
+                QString peptide_search_string = QString(_protein_search_string).replace("L","I");
+                for (PeptideMatch * p_peptide_match: protein_match->getPeptideMatchList()) {
+                    if (p_peptide_match->getPeptideXtpSp().get()->getSequenceLi().contains(peptide_search_string)) {
+                        return true;
+                    }
+                }
+                return false;
+            }
             else {
                 if (!protein_match->getProteinXtpSp().get()->getDescription().contains(_protein_search_string)) {
                     return false;