WIP : broken

src/core/project.cpp

@@ -39,24 +39,12 @@ Project::~Project()
     }
 }
 
+void Project::updateAutomaticFilters() {
+}
 ProjectSp Project::makeProjectSp() const {
     return std::make_shared<Project>(*this);
 }
 
-void Project::setFilterPeptideEvalue( pappso::pappso_double evalue) {
-    _filter_minimum_peptide_evalue = evalue;
-}
-
-void Project::setFilterProteinEvalue( pappso::pappso_double evalue) {
-    _filter_minimum_protein_evalue = evalue;
-}
-void Project::setFilterMinimumPeptidePerMatch(unsigned int number) {
-    _filter_minimum_peptide_per_match = number;
-}
-void Project::setFilterCrossSamplePeptideNumber(bool cross) {
-    _filter_is_cross_sample_peptide_number = cross;
-}
-
 IdentificationGroup* Project::newIdentificationGroup() {
     _p_current_identification_group =  new IdentificationGroup(this);
     _identification_goup_list.push_back(_p_current_identification_group);

src/core/project.h

@@ -25,7 +25,7 @@
 
 #include<memory>
 #include "identificationgroup.h"
-#include <pappsomspp/types.h>
+#include "automaticfilterparameters.h"
 
 class Project;
 typedef std::shared_ptr<Project> ProjectSp;
@@ -33,8 +33,9 @@ typedef std::shared_ptr<Project> ProjectSp;
 class PeptideMatch;
 class ProteinMatch;
 
-class Project
+class Project : public QObject
 {
+    Q_OBJECT
 public:
     Project();
     ~Project();
@@ -49,20 +50,22 @@ public:
     /** @brief is it valid regarding threshold and project rules
     */
     bool isValid(ProteinMatch* p_protein_match) const;
+
+    /** @brief validate or invalidate peptides and proteins based automatic filters and manual checks
+     * */
+    void updateAutomaticFilters(const AutomaticFilterParameters & automatic_filter_parameters);
     
-    void setFilterPeptideEvalue( pappso::pappso_double evalue);
-    void setFilterProteinEvalue( pappso::pappso_double evalue);
-    void setFilterMinimumPeptidePerMatch(unsigned int number);
-    void setFilterCrossSamplePeptideNumber(bool cross);
+    signals:    
+      /** @brief signal when automatic filters are applied and project is ready
+     * */
+    void projectReady();
+
 
 private :
     std::vector<IdentificationGroup *> _identification_goup_list;
     IdentificationGroup* _p_current_identification_group = nullptr;
-    
-    pappso::pappso_double _filter_minimum_peptide_evalue=1;
-    pappso::pappso_double _filter_minimum_protein_evalue=1;
-    unsigned int _filter_minimum_peptide_per_match=1;
-    bool _filter_is_cross_sample_peptide_number=false;
+
+    AutomaticFilterParameters _automatic_filter_parameters;
 };
 
 #endif // PROJECT_H