Skip to content
Snippets Groups Projects
Commit 9060c2b5 authored by Langella Olivier's avatar Langella Olivier
Browse files

beautifull mass delta histogram

parent fb96af01
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
src/gui/project_view/project_view.ui
+ 84
− 65
View file @ 9060c2b5
......@@ -24,7 +24,7 @@
<string/>
</property>
<property name="currentIndex">
<number>0</number>
<number>3</number>
</property>
<widget class="QWidget" name="identifications">
<attribute name="title">
......@@ -270,73 +270,92 @@
<item row="0" column="0">
<layout class="QVBoxLayout" name="verticalLayout_5">
<item>
<layout class="QFormLayout" name="formLayout_2">
<item row="0" column="0">
<layout class="QFormLayout" name="formLayout_3"/>
</item>
<item row="0" column="1">
<widget class="QComboBox" name="precision_unit_combobox">
<item>
<property name="text">
<string>ppm</string>
</property>
</item>
<item>
<property name="text">
<string>dalton</string>
<widget class="QWidget" name="widget" native="true">
<property name="sizePolicy">
<sizepolicy hsizetype="Preferred" vsizetype="Fixed">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<layout class="QVBoxLayout" name="verticalLayout_7">
<item>
<layout class="QFormLayout" name="formLayout_2">
<property name="sizeConstraint">
<enum>QLayout::SetMinimumSize</enum>
</property>
</item>
</widget>
</item>
<item row="1" column="0">
<widget class="QLabel" name="label_2">
<property name="text">
<string>mean</string>
</property>
</widget>
</item>
<item row="1" column="1">
<widget class="QLabel" name="mass_precision_mean_label">
<property name="text">
<string>0</string>
</property>
</widget>
</item>
<item row="2" column="0">
<widget class="QLabel" name="label_4">
<property name="text">
<string>median</string>
</property>
</widget>
</item>
<item row="2" column="1">
<widget class="QLabel" name="mass_precision_median_label">
<property name="text">
<string>0</string>
</property>
</widget>
</item>
<item row="3" column="0">
<widget class="QLabel" name="label_5">
<property name="text">
<string>standard deviation</string>
</property>
</widget>
</item>
<item row="3" column="1">
<widget class="QLabel" name="mass_precision_sd_label">
<property name="toolTip">
<string>Mass deviation is computed on all valid and checked proteins but not decoy</string>
</property>
<property name="text">
<string>0</string>
</property>
</widget>
</item>
</layout>
<item row="0" column="1">
<widget class="QComboBox" name="precision_unit_combobox">
<item>
<property name="text">
<string>ppm</string>
</property>
</item>
<item>
<property name="text">
<string>dalton</string>
</property>
</item>
</widget>
</item>
<item row="1" column="0">
<widget class="QLabel" name="label_2">
<property name="text">
<string>mean</string>
</property>
</widget>
</item>
<item row="1" column="1">
<widget class="QLabel" name="mass_precision_mean_label">
<property name="text">
<string>0</string>
</property>
</widget>
</item>
<item row="2" column="0">
<widget class="QLabel" name="label_4">
<property name="text">
<string>median</string>
</property>
</widget>
</item>
<item row="2" column="1">
<widget class="QLabel" name="mass_precision_median_label">
<property name="text">
<string>0</string>
</property>
</widget>
</item>
<item row="3" column="0">
<widget class="QLabel" name="label_5">
<property name="text">
<string>standard deviation</string>
</property>
</widget>
</item>
<item row="3" column="1">
<widget class="QLabel" name="mass_precision_sd_label">
<property name="toolTip">
<string>Mass deviation is computed on all valid and checked proteins but not decoy</string>
</property>
<property name="text">
<string>0</string>
</property>
</widget>
</item>
</layout>
</item>
</layout>
</widget>
</item>
<item>
<widget class="QCustomPlot" name="mass_histogram_widget" native="true"/>
<widget class="QCustomPlot" name="mass_histogram_widget" native="true">
<property name="sizePolicy">
<sizepolicy hsizetype="Preferred" vsizetype="Expanding">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
</widget>
</item>
</layout>
</item>
......
src/gui/project_view/projectwindow.cpp
+ 21
− 8
View file @ 9060c2b5
......@@ -67,6 +67,26 @@ ProjectWindow::ProjectWindow(MainWindow *parent):
_p_waiting_message_dialog = new WaitingMessageDialog(this);
ui->mass_histogram_widget->xAxis->setLabel("mass delta");
ui->mass_histogram_widget->yAxis->setLabel("count");
ui->mass_histogram_widget->setInteractions(QCP::iRangeDrag | QCP::iRangeZoom );
ui->mass_histogram_widget->axisRects().at(0)->setRangeDrag(Qt::Horizontal);
ui->mass_histogram_widget->axisRects().at(0)->setRangeZoom(Qt::Horizontal);
//legend->setVisible(false);
ui->mass_histogram_widget->legend->setFont(QFont("Helvetica",9));
// set locale to english, so we get english decimal separator:
//setLocale(QLocale(QLocale::English, QLocale::UnitedKingdom));
setFocusPolicy(Qt::ClickFocus);
QCPGraph * p_graph = ui->mass_histogram_widget->addGraph();
//p_graph->setName("raw xic");
//QPen pen;
//pen.setColor(getNewColors());
//graph()->setPen(pen);
//graph()->setName(lineNames.at(i-QCPGraph::lsNone));
p_graph->setLineStyle(QCPGraph::LineStyle::lsStepCenter);
//p_graph->setScatterStyle(QCPScatterStyle(QCPScatterStyle::ssDisc, 2.0));
#if QT_VERSION >= 0x050000
// Qt5 code
......@@ -294,14 +314,7 @@ void ProjectWindow::computeMassPrecision() {
y.push_back(mass_pair.second);
}
QCPGraph * p_graph = ui->mass_histogram_widget->addGraph();
//p_graph->setName("raw xic");
//QPen pen;
//pen.setColor(getNewColors());
//graph()->setPen(pen);
//graph()->setName(lineNames.at(i-QCPGraph::lsNone));
p_graph->setLineStyle(QCPGraph::LineStyle::lsStepCenter);
//p_graph->setScatterStyle(QCPScatterStyle(QCPScatterStyle::ssDisc, 2.0));
QCPGraph * p_graph = ui->mass_histogram_widget->graph();
p_graph->setData(x,y);
p_graph->rescaleAxes(true);
ui->mass_histogram_widget->rescaleAxes();
......
src/utils/utils.cpp
+ 4
− 3
View file @ 9060c2b5
......@@ -39,7 +39,7 @@ const QString Utils::getDatabaseName(ExternalDatabase database) {
std::vector<std::pair<pappso::pappso_double, size_t>> Utils::getHistogram(std::vector<pappso::pappso_double> data_values, unsigned int number_of_class) {
std::vector<std::pair<pappso::pappso_double, size_t>> histogram(number_of_class);
std::vector<std::pair<pappso::pappso_double, size_t>> histogram(number_of_class+1);
try {
qDebug() << "Utils::getHistogram begin";
......@@ -51,11 +51,12 @@ std::vector<std::pair<pappso::pappso_double, size_t>> Utils::getHistogram(std::v
qDebug() << "Utils::getHistogram number_of_class offset=" << offset;
for (unsigned int i= 0; i < histogram.size(); i++) {
histogram[i] = std::pair<pappso::pappso_double, size_t> {(min + (offset * i) + (offset/2)), 0};
qDebug() << "Utils::getHistogram x=" << histogram[i].first;
}
qDebug() << "Utils::getHistogram data_values";
for (pappso::pappso_double value :data_values) {
qDebug() << "Utils::getHistogram value=" << value;
unsigned int i = std::abs((min+(min-value))/offset );
//qDebug() << "Utils::getHistogram value=" << value;
unsigned int i = std::abs((value-min)/offset );
qDebug() << "Utils::getHistogram i=" << i << " size=" << histogram.size();
histogram.at(i).second++;
}
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment