Correct bug check protein doesnt work

src/main.cpp

@@ -35,51 +35,53 @@ using namespace std;
 int
 main(int argc, char *argv[])
 {
-  QTextStream errorStream(stderr, QIODevice::WriteOnly);
-  QApplication app(argc, argv);
+    QTextStream errorStream(stderr, QIODevice::WriteOnly);
+    QApplication app(argc, argv);
 
-  qRegisterMetaType<TandemRunBatch>("TandemRunBatch");
-  qRegisterMetaType<std::vector<pappso::pappso_double>>(
-    "std::vector<pappso::pappso_double>");
-  qRegisterMetaType<pappso::PrecisionPtr>("pappso::PrecisionPtr");
-  qRegisterMetaType<std::vector<pappso::XicCstSPtr>>(
-    "std::vector<pappso::XicCstSPtr>");
-  qRegisterMetaType<pappso::PeptideSp>("pappso::PeptideSp");
-  qRegisterMetaType<pappso::XicExtractMethod>("pappso::XicExtractMethod");
-  qRegisterMetaType<pappso::MassSpectrumCstSPtr>("pappso::MassSpectrumCstSPtr");
-  qRegisterMetaType<MsRunSp>("MsRunSp");
-  qRegisterMetaType<std::vector<pappso::PeptideNaturalIsotopeAverageSp>>(
-    "std::vector<pappso::PeptideNaturalIsotopeAverageSp>");
-  qRegisterMetaType<ExportFastaType>("ExportFastaType");
-  qRegisterMetaType<MasschroqFileParameters>("MasschroqFileParameters");
+    qRegisterMetaType<TandemRunBatch>("TandemRunBatch");
+    qRegisterMetaType<std::vector<pappso::pappso_double>>(
+                "std::vector<pappso::pappso_double>");
+    qRegisterMetaType<pappso::PrecisionPtr>("pappso::PrecisionPtr");
+    qRegisterMetaType<std::vector<pappso::XicCstSPtr>>(
+                "std::vector<pappso::XicCstSPtr>");
+    qRegisterMetaType<pappso::PeptideSp>("pappso::PeptideSp");
+    qRegisterMetaType<pappso::XicExtractMethod>("pappso::XicExtractMethod");
+    qRegisterMetaType<pappso::MassSpectrumCstSPtr>("pappso::MassSpectrumCstSPtr");
+    qRegisterMetaType<MsRunSp>("MsRunSp");
+    qRegisterMetaType<std::vector<pappso::PeptideNaturalIsotopeAverageSp>>(
+                "std::vector<pappso::PeptideNaturalIsotopeAverageSp>");
+    qRegisterMetaType<ExportFastaType>("ExportFastaType");
+    qRegisterMetaType<MasschroqFileParameters>("MasschroqFileParameters");
 
-  // qRegisterMetaType<pappso::PeakIonIsotopeMatch>("pappso::PeakIonIsotopeMatch");
+    qRegisterMetaType<ContaminantRemovalMode>("ContaminantRemovalMode");
 
-  try
+    // qRegisterMetaType<pappso::PeakIonIsotopeMatch>("pappso::PeakIonIsotopeMatch");
+
+    try
     {
-      QCoreApplication::setOrganizationName("PAPPSO");
-      QCoreApplication::setOrganizationDomain("pappso.inra.fr");
-      QCoreApplication::setApplicationName("xtpcpp");
-      MainWindow window;
-      window.show();
+        QCoreApplication::setOrganizationName("PAPPSO");
+        QCoreApplication::setOrganizationDomain("pappso.inra.fr");
+        QCoreApplication::setApplicationName("xtpcpp");
+        MainWindow window;
+        window.show();
 
-      // This code will start the messaging engine in QT and in
-      // 10ms it will start the execution in the MainClass.run routine;
-      QTimer::singleShot(10, &window, SLOT(run()));
+        // This code will start the messaging engine in QT and in
+        // 10ms it will start the execution in the MainClass.run routine;
+        QTimer::singleShot(10, &window, SLOT(run()));
 
-      return app.exec();
+        return app.exec();
     }
-  catch(pappso::PappsoException &error)
+    catch(pappso::PappsoException &error)
     {
-      errorStream << "Oops! an error occurred in XTPcpp. Dont Panic :" << endl;
-      errorStream << error.qwhat() << endl;
-      app.exit(1);
+        errorStream << "Oops! an error occurred in XTPcpp. Dont Panic :" << endl;
+        errorStream << error.qwhat() << endl;
+        app.exit(1);
     }
 
-  catch(std::exception &error)
+    catch(std::exception &error)
     {
-      errorStream << "Oops! an error occurred in XTPcpp. Dont Panic :" << endl;
-      errorStream << error.what() << endl;
-      app.exit(1);
+        errorStream << "Oops! an error occurred in XTPcpp. Dont Panic :" << endl;
+        errorStream << error.what() << endl;
+        app.exit(1);
     }
 }