src/core/identificationgroup.cpp

src/core/peptidematch.cpp

src/core/peptidematch.h

src/core/proteinmatch.cpp

src/core/proteinmatch.h

src/grouping/groupingexperiment.h

src/grouping/groupinggroup.cpp

src/grouping/groupinggroup.h

src/grouping/groupingpeptidemass.cpp

src/grouping/groupingpeptidemass.h

src/grouping/ptm/ptmgroupingexperiment.cpp

src/grouping/ptm/ptmgroupingexperiment.h

src/grouping/ptm/ptmisland.cpp

src/grouping/ptm/ptmisland.h

src/grouping/ptm/ptmsamplescan.cpp

src/grouping/ptm/ptmsamplescan.h

src/input/identificationpwizreader.cpp

src/input/xpipsaxhandler.cpp

src/input/xpipsaxhandler.h

src/utils/peptideevidencestore.cpp