fiex little typo in doc (thanks to Céline Henry

doc/xtandem_pipeline.tex

@@ -206,11 +206,11 @@ The filter window (Fig~\ref{filter}) defines the automated filtering process par
 \item The protein E-value is the product of its valid unique peptide E-values and it is different from the protein E-values determined by X!Tandem. 
 \item The values are expressed in log(E-value).
 \end{itemize}
-\item[Sum to all] \hfill \\Defines how protein filter is performed when MS/MS results are combined :
+\item[Apply protein filter to all samples together] \hfill \\Defines how protein filter is performed when MS/MS results are combined :
 \begin{description}
-\item[No] To validate a protein, the 2 parameters (peptide number and protein E-value) must be valid in at least one result.
+\item[Disabled] To validate a protein, the 2 parameters (peptide number and protein E-value) must be valid in at least one result.
 Interesting if one wants to compare SDS-PAGE-LC-MS/MS results, where peptides from a protein are in the same LC-MS/MS run.
-\item[Yes] To validate a protein, the 2 parameters (peptide number and protein E-value) must be valid in the sum of all results.
+\item[Enabled] To validate a protein, the 2 parameters (peptide number and protein E-value) must be valid in the sum of all results.
 Interesting if one wants to compare 2DLC-MS/MS results, where peptides from a protein are split in different LC-MS/MS runs.
 \end{description}
 \item[Contaminants] \hfill \\When you perform an analysis using different fasta databases, you can remove the result from one database by selecting this database.
@@ -236,8 +236,8 @@ After loading the results, you can select the result to view in the main window
 
 \begin{itemize}
 \item First frame "Identification Results" : choose the result to edit, displays the current number of samples and groups.
-\item False Discovery Rate : estimates an FDR using a reverse/decoy database (see ~\ref{fdr})
-\item Mass precision : computes the standard deviation between theoretical and observed mass of peptides (see ~\ref{standard_deviation})
+\item False Discovery Rate : estimates an FDR using a reverse/decoy database %(see ~\ref{fdr})
+\item Mass precision : computes the standard deviation between theoretical and observed mass of peptides %(see ~\ref{standard_deviation})
 \item Filter identification results : choose criterium to validate identifications as described in ~\ref{filters}
 \end{itemize}
 
@@ -261,6 +261,7 @@ corresponding peptides;
 \end{itemize}
 
 \begin{figure}[!ht]
+\label{prot}
 \center \includegraphics[scale=0.5]{images/window_protein}
 \caption{Proteins List}
 \end{figure}