extract XIC in other MsRun

src/gui/xic_view/xic_box/xic_box.ui

@@ -180,8 +180,8 @@
    <slot>remove()</slot>
    <hints>
     <hint type="sourcelabel">
-     <x>378</x>
-     <y>25</y>
+     <x>592</x>
+     <y>39</y>
     </hint>
     <hint type="destinationlabel">
      <x>585</x>
@@ -189,8 +189,25 @@
     </hint>
    </hints>
   </connection>
+  <connection>
+   <sender>pushButton_2</sender>
+   <signal>clicked()</signal>
+   <receiver>XicBox</receiver>
+   <slot>extractXicInOtherMsRun()</slot>
+   <hints>
+    <hint type="sourcelabel">
+     <x>414</x>
+     <y>38</y>
+    </hint>
+    <hint type="destinationlabel">
+     <x>891</x>
+     <y>69</y>
+    </hint>
+   </hints>
+  </connection>
  </connections>
  <slots>
   <slot>remove()</slot>
+  <slot>extractXicInOtherMsRun()</slot>
  </slots>
 </ui>

src/gui/xic_view/xic_box/xicbox.cpp

@@ -29,7 +29,7 @@
 #include "xicbox.h"
 #include "ui_xic_box.h"
 #include <QMessageBox>
-#include <pappsomspp/pappsoexception.h>
+#include <pappsomspp/exception/exceptionnotfound.h>
 #include "../xicworkerthread.h"
 #include "../../project_view/projectwindow.h"
 #include <pappsomspp/xic/detection/xicdetectionzivy.h>
@@ -110,6 +110,19 @@ XicBox::XicBox(XicWindow *parent):
 #endif
 
 
+    QStringList msrun_list;
+    for (MsRunSp msrun_sp : _p_xic_window->getProjectWindow()->getProjectP()->getMsRunStore().getMsRunList()) {
+        msrun_list << msrun_sp.get()->getFilename();
+        qDebug() << "ProteinListWindow::setIdentificationGroup " << msrun_sp.get()->getFilename();
+    }
+    QCompleter *completer = new QCompleter(msrun_list, this);
+    completer->setCaseSensitivity(Qt::CaseInsensitive);
+
+    completer->setCompletionMode(QCompleter::PopupCompletion);
+    completer->setModelSorting(QCompleter::CaseSensitivelySortedModel);
+    completer->setFilterMode(Qt::MatchContains);
+    ui->msrun_autocompletion->setCompleter(completer);
+
 }
 
 XicBox::~XicBox()
@@ -128,10 +141,23 @@ void XicBox::error(QString error_message) {
                          tr("Error trying to save spectrum to SVG file :"), error_message);
 
 }
+
+void XicBox::extractXicInOtherMsRun() {
+    qDebug() << "XicBox::extractXicInOtherMsRun begin";
+    try {
+        MsRunSp msrun_sp = _p_xic_window->getProjectWindow()->getProjectP()->getMsRunStore().getInstance(ui->msrun_autocompletion->text());
+        _p_xic_window->addXicInMsRun(_p_peptide_evidence, msrun_sp);
+    }
+    catch (pappso::ExceptionNotFound & error) {
+        qDebug() << "XicBox::extractXicInOtherMsRun not found " << ui->msrun_autocompletion->text();
+    }
+}
+
 void XicBox::setPeptideEvidence(const PeptideEvidence * p_peptide_evidence) {
 
+
     _p_peptide_evidence = p_peptide_evidence;
-    _msrun_sp = _p_xic_window->getProjectWindow()->getProjectP()->getMsRunStore().getInstance(_p_peptide_evidence->getMsRunP());
+    _msrun_sp = p_peptide_evidence->getIdentificationDataSource()->getMsRunSp();
 
     ui->peptide_label->setText(_p_peptide_evidence->getPeptideXtpSp().get()->toString());
     ui->msrun_label->setText(_p_peptide_evidence->getMsRunP()->getFilename());
@@ -147,6 +173,23 @@ void XicBox::setPeptideEvidence(const PeptideEvidence * p_peptide_evidence) {
 
 }
 
+void XicBox::setPeptideEvidenceInMsRun(const PeptideEvidence * p_peptide_evidence, MsRunSp msrun_sp) {
+        _p_peptide_evidence = p_peptide_evidence;
+    _msrun_sp = msrun_sp;
+
+    ui->peptide_label->setText(_p_peptide_evidence->getPeptideXtpSp().get()->toString());
+    ui->msrun_label->setText(msrun_sp->getFilename());
+    ui->charge_label->setText(QString("%1").arg(_p_peptide_evidence->getCharge()));
+    ui->mz_label->setText(QString::number(_p_peptide_evidence->getTheoreticalMz(), 'f', 4));
+
+    //get same xic peptide evidence (msrun, peptide, charge)
+    //p_projet
+    _peptide_evidence_list.clear();
+    //_p_xic_window->getProjectWindow()->getProjectP()->getSameXicPeptideEvidenceList(p_peptide_evidence, _peptide_evidence_list);
+
+    emit computeIsotopeMassList(_p_peptide_evidence->getPeptideXtpSp(), _p_peptide_evidence->getCharge(), _p_xic_window->getXicExtractPrecision(), 0.8);
+
+}
 
 void XicBox::setXic(std::vector< pappso::XicSp> xic_sp_list) {
     qDebug() << "XicBox::setXic begin " << xic_sp_list.size();

src/gui/xic_view/xic_box/xicbox.h

@@ -51,6 +51,7 @@ public:
     explicit XicBox(XicWindow * parent = 0);
     ~XicBox();
     void setPeptideEvidence(const PeptideEvidence * p_peptide_evidence) ;
+    void setPeptideEvidenceInMsRun(const PeptideEvidence * p_peptide_evidence, MsRunSp msrun_sp);
     
 signals :
     void loadXic(MsRunSp p_msrun, std::vector<pappso::mz> mz_list, pappso::PrecisionP precision, XicExtractMethod method);
@@ -61,6 +62,7 @@ private slots:
     void setXic(std::vector< pappso::XicSp> xic_sp_list);
     void setIsotopeMassList(std::vector<pappso::PeptideNaturalIsotopeAverageSp> isotope_mass_list);
     void error(QString error_message);
+    void extractXicInOtherMsRun();
 private:
     Ui::XicBox *ui;
     QThread _xic_thread;

src/gui/xic_view/xicwindow.cpp

@@ -78,6 +78,11 @@ void XicWindow::addXic(const PeptideEvidence * p_peptide_evidence) {
     ui->xic_vertical_layout->layout()->addWidget(p_box);
 }
 
+void XicWindow::addXicInMsRun(const PeptideEvidence * p_peptide_evidence, MsRunSp msrun_sp) {
+    XicBox * p_box = new XicBox(this);
+    p_box->setPeptideEvidenceInMsRun(p_peptide_evidence, msrun_sp);
+    ui->xic_vertical_layout->layout()->addWidget(p_box);
+}
 
 void XicWindow::removeXicBox(XicBox * xic_box) {
     xic_box->setVisible(false);

src/gui/xic_view/xicwindow.h

@@ -52,6 +52,7 @@ public:
     ~XicWindow();
 
     void addXic(const PeptideEvidence * p_peptide_evidence);
+    void addXicInMsRun(const PeptideEvidence * p_peptide_evidence, MsRunSp msrun_sp);
 
     pappso::PrecisionP getXicExtractPrecision() const;