replace modification is OK

src/CMakeLists.txt

@@ -27,11 +27,11 @@ SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${Qt5Xml_EXECUTABLE_COMPILE_FLAGS} ${Qt5
 
 
 #sudo apt-get install libpappsomspp-dev
-FIND_PACKAGE( Pappsomspp REQUIRED )
+#FIND_PACKAGE( Pappsomspp REQUIRED )
 # SET (PAPPSOMSPP_DIR  "/home/olivier/eclipse/git/pappsomspp")
-# SET (PAPPSOMSPP_DIR  "/home/langella/developpement/git/pappsomspp")
-# SET (PAPPSOMSPP_INCLUDE_DIR "${PAPPSOMSPP_DIR}/src")
-# SET (PAPPSOMSPP_QT4_LIBRARY "${PAPPSOMSPP_DIR}/cbuild/src/libpappsomspp-qt4.so")
+ SET (PAPPSOMSPP_DIR  "/home/langella/developpement/git/pappsomspp")
+ SET (PAPPSOMSPP_INCLUDE_DIR "${PAPPSOMSPP_DIR}/src")
+ SET (PAPPSOMSPP_QT4_LIBRARY "${PAPPSOMSPP_DIR}/cbuild/src/libpappsomspp-qt4.so")
 
 
 set(CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/cmake_modules)

src/core/peptidextp.cpp

@@ -78,10 +78,10 @@ const pappso::Peptide * PeptideXtp::getNativePeptideP() const {
 }
 
 bool PeptideXtp::replaceModification(pappso::AaModificationP oldmod, pappso::AaModificationP newmod) {
-    /*
-    pappso::Peptide::replaceModification(oldmod, newmod);
+    
+    pappso::Peptide::replaceAaModification(oldmod, newmod);
     if (_sp_native_peptide.get() != nullptr) {
-        _sp_native_peptide.get()->replaceModification(oldmod, newmod);
+        //_sp_native_peptide.get()->replaceAaModification(oldmod, newmod);
     }
-    */
+    
 }

src/gui/choose_modification_dialog/choose_modification_dialog.ui

@@ -11,7 +11,7 @@
    </rect>
   </property>
   <property name="windowTitle">
-   <string>Form</string>
+   <string>PSI MOD selection</string>
   </property>
   <layout class="QVBoxLayout" name="verticalLayout_2">
    <item>

src/gui/choose_modification_dialog/choosemodificationdialog.cpp

@@ -70,7 +70,7 @@ ChooseModificationDialog::~ChooseModificationDialog()
 void ChooseModificationDialog::setMassRange(const pappso::MassRange & massrange) {
     
             qDebug() << "ChooseModificationDialog::setMassRange " << massrange.toString();
-            
+            _selected_modification = nullptr;
     _p_modification_str_li->removeRows(0,_p_modification_str_li->rowCount());
         pappso::FilterOboPsiModSink term_list;
 

src/gui/edit_modifications/editmodifications.cpp

@@ -142,12 +142,17 @@ void EditModifications::doActionReplace() {
     if (_selected_modification != nullptr) {
         if (_replace_modification != nullptr) {
             _project_sp.get()->getPeptideStore().replaceModification(_selected_modification, _replace_modification);
+            
+    _project_window->doAutomaticFilterParametersChanged(_project_sp.get()->getAutomaticFilterParameters());
+    setProjectSp(_project_sp);
         }
     }
+    
     qDebug() << "EditModifications::doActionReplace end";
 }
 
 
     void EditModifications::doAcceptedBrowseDialog() {
     setReplaceModification(_p_browse_modification_dialog->getSelectedModification());
+
     }

src/utils/peptidestore.cpp

@@ -63,8 +63,11 @@ PeptideXtpSp & PeptideStore::getInstance(PeptideXtpSp & peptide_in) {
 bool PeptideStore::replaceModification(pappso::AaModificationP oldmod, pappso::AaModificationP newmod) {
     for (std::pair<std::size_t, PeptideXtpSp> pair_peptide:_map_crc_peptide_list) {
         PeptideXtpSp peptide_xtp = pair_peptide.second;
-        peptide_xtp.get()->replaceModification(oldmod, newmod);
+        peptide_xtp.get()->replaceAaModification(oldmod, newmod);
     }
+    _modification_collection.erase(oldmod);
+    _modification_collection.insert(newmod);
+    
 }
 
 const std::set<pappso::AaModificationP> & PeptideStore::getModificationCollection() const {