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Commit 37ea0a23 authored by Langella Olivier's avatar Langella Olivier
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compute FDR also on grouped proteins

parent 5716d087
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src/gui/project_view/project_view.ui
+ 66
− 12
View file @ 37ea0a23
...@@ -24,7 +24,7 @@ ...@@ -24,7 +24,7 @@
<string/> <string/>
</property> </property>
<property name="currentIndex"> <property name="currentIndex">
<number>1</number> <number>2</number>
</property> </property>
<widget class="QWidget" name="identifications"> <widget class="QWidget" name="identifications">
<attribute name="title"> <attribute name="title">
...@@ -82,23 +82,16 @@ ...@@ -82,23 +82,16 @@
<item> <item>
<widget class="QGroupBox" name="groupBox_3"> <widget class="QGroupBox" name="groupBox_3">
<property name="toolTip"> <property name="toolTip">
<string/> <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;FDR is computed using proteins tagged as &amp;quot;decoy&amp;quot; on all valid peptides in valid proteins (check filter parameters)&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
</property> </property>
<property name="title"> <property name="title">
<string>FDR</string> <string>FDR</string>
</property> </property>
<layout class="QFormLayout" name="formLayout"> <layout class="QGridLayout" name="gridLayout_4">
<item row="0" column="0">
<widget class="QLabel" name="label">
<property name="text">
<string>FDR on peptides</string>
</property>
</widget>
</item>
<item row="0" column="1"> <item row="0" column="1">
<widget class="QLabel" name="peptide_fdr_label"> <widget class="QLabel" name="peptide_fdr_label">
<property name="toolTip"> <property name="toolTip">
<string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;FDR is computed using peptides tagged as &amp;quot;decoy&amp;quot; on all valid peptides in valid proteins (check filter parameters)&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string> <string/>
</property> </property>
<property name="text"> <property name="text">
<string>0 %</string> <string>0 %</string>
...@@ -112,11 +105,72 @@ ...@@ -112,11 +105,72 @@
</property> </property>
</widget> </widget>
</item> </item>
<item row="0" column="2">
<spacer name="horizontalSpacer_3">
<property name="orientation">
<enum>Qt::Horizontal</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>40</width>
<height>20</height>
</size>
</property>
</spacer>
</item>
<item row="0" column="3">
<widget class="QLabel" name="label_6">
<property name="text">
<string>grouped peptides</string>
</property>
</widget>
</item>
<item row="0" column="0">
<widget class="QLabel" name="label">
<property name="text">
<string>FDR on peptides</string>
</property>
</widget>
</item>
<item row="1" column="1"> <item row="1" column="1">
<widget class="QLabel" name="protein_fdr_label"> <widget class="QLabel" name="protein_fdr_label">
<property name="toolTip"> <property name="toolTip">
<string>FDR is computed using proteins tagged as &quot;decoy&quot; on all valid proteins (check filter parameters)</string> <string/>
</property>
<property name="text">
<string>0 %</string>
</property>
</widget>
</item>
<item row="0" column="4">
<widget class="QLabel" name="grouped_peptide_fdr_label">
<property name="text">
<string>0 %</string>
</property> </property>
</widget>
</item>
<item row="1" column="2">
<spacer name="horizontalSpacer_4">
<property name="orientation">
<enum>Qt::Horizontal</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>40</width>
<height>20</height>
</size>
</property>
</spacer>
</item>
<item row="1" column="3">
<widget class="QLabel" name="label_7">
<property name="text">
<string>grouped proteins</string>
</property>
</widget>
</item>
<item row="1" column="4">
<widget class="QLabel" name="grouped_protein_fdr_label">
<property name="text"> <property name="text">
<string>0 %</string> <string>0 %</string>
</property> </property>
......
src/gui/project_view/projectwindow.cpp
+ 19
− 2
View file @ 37ea0a23
...@@ -221,8 +221,25 @@ void ProjectWindow::computeFdr() { ...@@ -221,8 +221,25 @@ void ProjectWindow::computeFdr() {
total_peptide += identification_group->countPeptideMassSample(state); total_peptide += identification_group->countPeptideMassSample(state);
false_peptide += identification_group->countDecoyPeptideMassSample(state); false_peptide += identification_group->countDecoyPeptideMassSample(state);
} }
ui->protein_fdr_label->setText(QString("%1 %").arg(QString::number((false_prot/total_prot)*100.0,'f',10))); ui->protein_fdr_label->setText(QString("%1 %").arg(QString::number((false_prot/total_prot)*100.0,'f',2)));
ui->peptide_fdr_label->setText(QString("%1 %").arg(QString::number((false_peptide/total_peptide)*100.0,'f',10))); ui->peptide_fdr_label->setText(QString("%1 %").arg(QString::number((false_peptide/total_peptide)*100.0,'f',2)));
state = ValidationState::grouped;
total_prot=0;
false_prot=0;
total_peptide=0;
false_peptide=0;
for (IdentificationGroup * identification_group : _project_sp.get()->getIdentificationGroupList()) {
total_prot += identification_group->countProteinMatch(state);
false_prot += identification_group->countDecoyProteinMatch(state);
//total_peptide += identification_group->countPeptideMatch(state);
//false_peptide += identification_group->countDecoyPeptideMatch(state);
total_peptide += identification_group->countPeptideMassSample(state);
false_peptide += identification_group->countDecoyPeptideMassSample(state);
}
ui->grouped_protein_fdr_label->setText(QString("%1 %").arg(QString::number((false_prot/total_prot)*100.0,'f',2)));
ui->grouped_peptide_fdr_label->setText(QString("%1 %").arg(QString::number((false_peptide/total_peptide)*100.0,'f',2)));
} }
catch (pappso::PappsoException exception_pappso) { catch (pappso::PappsoException exception_pappso) {
QMessageBox::warning(this, QMessageBox::warning(this,
......
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