removing const

src/core/qvalue/computeqvalues.cpp

@@ -144,7 +144,7 @@ ComputeQvalues::computeMascotPeptideEvidenceQvalues(
 
 void
 ComputeQvalues::computeTandemPeptideEvidenceQvalues(
-  std::vector<PeptideEvidence *> &tandem_peptide_evidence_list) const
+  std::vector<PeptideEvidence *> &tandem_peptide_evidence_list)
 {
   std::sort(tandem_peptide_evidence_list.begin(),
             tandem_peptide_evidence_list.end(),
@@ -169,6 +169,7 @@ ComputeQvalues::computeTandemPeptideEvidenceQvalues(
     }
 
   cleanPeptideEvidenceList(tandem_peptide_evidence_list);
+  m_tandemPeptideEvidenceList = tandem_peptide_evidence_list;
 }
 
 void
@@ -199,4 +200,29 @@ ComputeQvalues::cleanPeptideEvidenceList(
 void
 ComputeQvalues::writeDistributionsByEngines(CalcWriterInterface *p_writer) const
 {
+
+  std::size_t count_decoy  = 0;
+  std::size_t count_target = 0;
+  for(PeptideEvidence *pep : m_tandemPeptideEvidenceList)
+    {
+      if(m_falsePeptideEvidenceList.find(pep) !=
+         m_falsePeptideEvidenceList.end())
+        {
+          count_decoy++;
+        }
+      else
+        {
+          count_target++;
+        }
+      // double qvalue = Utils::computeFdr(count_decoy, count_target);
+      // pep->setParam(PeptideEvidenceParam::pappso_qvalue, QVariant(qvalue));
+      p_writer->writeCell((int) count_target);
+
+      p_writer->writeCell((int) count_decoy);
+
+      p_writer->writeCell(pep->getEvalue());
+
+      p_writer->writeCell(pep->getParam(PeptideEvidenceParam::pappso_qvalue).toDouble());
+      p_writer->writeLine();
+    }
 }

src/core/qvalue/computeqvalues.h

@@ -51,7 +51,7 @@ class ComputeQvalues
 
   private:
   void computeTandemPeptideEvidenceQvalues(
-    std::vector<PeptideEvidence *> &tandem_peptide_evidence_list) const;
+    std::vector<PeptideEvidence *> &tandem_peptide_evidence_list);
   void computeMascotPeptideEvidenceQvalues(
     std::vector<PeptideEvidence *> &mascot_peptide_evidence_list) const;
 
@@ -60,4 +60,7 @@ class ComputeQvalues
 
   private:
   std::set<const PeptideEvidence *> m_falsePeptideEvidenceList;
+  
+    std::vector<PeptideEvidence *> m_tandemPeptideEvidenceList;
+  
 };