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/*******************************************************************************
* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
*
* This file is part of XTPcpp.
*
* XTPcpp is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* XTPcpp is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with XTPcpp. If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
* Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
******************************************************************************/
#ifndef _TYPES_H_
#define _TYPES_H_ 1
/*********** enumerations *********************************/
/** \def GroupingType list of available grouping algoritms
*
*/
enum class GroupingType {
PeptideMass, ///< protein grouper algo
Phospho, ///< phospho peptides grouping
SampleScan ///< X!TandemPipeline algo
};
/** \def ProteinListColumn list of available fields to display in protein list
*
*/
enum class ProteinListColumn {
checked, ///< manual checked
group, ///< group id
accession, ///< accession
description, ///< protein description
evalue, ///< Evalue
spectrum, ///< spectrum count
specific_spectrum, ///< specific spectrum count
sequence, ///< unique sequence count
specific_sequence, ///< specific unique sequence
coverage, ///< protein coverage
pai, ///< PAI
};