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/**
* \file core/qvalue/computeqvalues.h
* \date 04/09/2019
* \author Olivier Langella
* \brief compute q-value for each peptide evidence (PSM) of a project
*/
/*******************************************************************************
* Copyright (c) 2019 Olivier Langella <olivier.langella@u-psud.fr>.
*
* This file is part of XTPcpp.
*
* XTPcpp is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* XTPcpp is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with XTPcpp. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
#pragma once
#include "../project.h"
/**
* @todo write docs
*/
class ComputeQvalues
{
public:
/**
* Default constructor
*/
ComputeQvalues(ProjectSp project_sp);
/**
* Destructor
*/
~ComputeQvalues();
private:
void computeTandemPeptideEvidenceQvalues(
std::vector<PeptideEvidence *> &tandem_peptide_evidence_list) const;
void computeMascotPeptideEvidenceQvalues(
std::vector<PeptideEvidence *> &mascot_peptide_evidence_list) const;
void cleanPeptideEvidenceList(
std::vector<PeptideEvidence *> &peptide_evidence_list) const;
private:
std::set<const PeptideEvidence *> m_falsePeptideEvidenceList;