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text-mining-workflow
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Omnicrobe
text-mining-workflow
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!69
Resolve "mettre à jour les données des cirms"
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Resolve "mettre à jour les données des cirms"
123-mettre-a-jour-les-donnees-des-cirms
into
dev
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Mouhamadou Ba
requested to merge
123-mettre-a-jour-les-donnees-des-cirms
into
dev
1 year ago
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#123 (closed)
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dev
version 2
30e24af6
1 year ago
version 1
87a60963
1 year ago
dev (base)
and
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latest version
493482cd
3 commits,
1 year ago
version 2
30e24af6
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1 year ago
version 1
87a60963
1 commit,
1 year ago
2 files
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config/config.yaml
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@@ -25,13 +25,13 @@ BACDIVE_ENTRIES: "ancillaries/extended-microorganisms-taxonomy/bacdive-strains/e
CIRM_FOLDER_NAME
:
"
cirm"
CIRM_CORPUS_HOME
:
"
corpora/cirm/"
# bia, #column indexes to be changed into the cirm snakefile
CIRM_BIA_CORPUS
:
"
corpora/cirm/BIA_202
2
/Omnicrobe-
3
0-0
9
-2
2
.xlsx"
CIRM_BIA_CORPUS
:
"
corpora/cirm/BIA_202
3
/Omnicrobe-0
9
-0
3
-2
023
.xlsx"
# column indexes to be changed into the cirm snakefile
# yeast
CIRM_YEAST_CORPUS
:
"
corpora/cirm/Levures_2022/Omnicrobe_14102022.xlsx"
# column indexes to be changed into the cirm snakefile
# cfbp
CIRM_CFBP_CORPUS
:
"
corpora/cirm/CFBP_202
2/DonneesCIRM-CFBP_Omnicobe_20221007
.xlsx"
CIRM_CFBP_CORPUS
:
"
corpora/cirm/CFBP_202
3/ExportDonneesSouches16Mars2023
.xlsx"
#column indexes to be changed into the cirm snakefile
CIRM_TAXA_CORPUS
:
"
"
CIRM_HABITAT_CORPUS
:
"
"
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