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Omnicrobe
text-mining-workflow
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!50
Resolve "Index multiple paths"
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Resolve "Index multiple paths"
63-index-multiple-paths
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dev
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Robert Bossy
requested to merge
63-index-multiple-paths
into
dev
2 years ago
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#63 (closed)
Edited
2 years ago
by
Mouhamadou Ba
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plans/entities.plan
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@@ -1293,85 +1293,68 @@
<text>
"{SENT}"
</text>
</annotations>
<annotations>
<instances>
layer:habitats
</instances>
<text>
"{habitat}" ^ @concept-path ^ "/"
</text>
</annotations>
<annotations>
<instances>
layer:phenotypes
</instances>
<text>
"{phenotype}" ^ @concept-path ^ "/"
</text>
</annotations>
<annotations>
<instances>
layer:uses
</instances>
<text>
"{use}" ^ @concept-path ^ "/"
</text>
</annotations>
<annotations>
<instances>
relations:CooccurrenceLocalization.tuples
</instances>
<instances>
layer:habitats.sort:nsval(nav:features:concept-path, @value)
</instances>
<identifier>
nav:parent.id:unique
</identifier>
<text>
"{habitat}" ^ @value ^ "/"
</text>
<fragments>
<instances>
sort:ival(args, start)
</instances>
<instances>
$
</instances>
<start>
nav:parent.start
</start>
<end>
nav:parent.end
</end>
</fragments>
<text>
"{livesin}{taxon}" ^ args:Bacterium.@path ^ "/~{habitat}" ^ args:Localization.@concept-path ^ "/"
</text>
<arguments>
<taxon>
args:Bacterium.id:unique
</taxon>
<habitat>
args:Localization.id:unique
</habitat>
</arguments>
</annotations>
<annotations>
<instances>
relations:CooccurrenceLocalization.tuples
</instances>
<instances>
layer:phenotypes.sort:nsval(nav:features:concept-path, @value)
</instances>
<identifier>
nav:parent.id:unique
</identifier>
<text>
"{phenotype}" ^ @value ^ "/"
</text>
<fragments>
<instances>
sort:ival(args, start)
</instances>
<instances>
$
</instances>
<start>
nav:parent.start
</start>
<end>
nav:parent.end
</end>
</fragments>
<text>
"{livesin}" ^ args:Bacterium.@form ^ "/~" ^ args:Localization.@form ^ "/"
</text>
<arguments>
<taxon>
args:Bacterium.id:unique
</taxon>
<habitat>
args:Localization.id:unique
</habitat>
</arguments>
</annotations>
<annotations>
<instances>
relations:PhenotypeRelation.tuples
</instances>
<instances>
layer:uses.sort:nsval(nav:features:concept-path, @value)
</instances>
<identifier>
nav:parent.id:unique
</identifier>
<text>
"{use}" ^ @value ^ "/"
</text>
<fragments>
<instances>
sort:ival(args, start)
</instances>
<instances>
$
</instances>
<start>
nav:parent.start
</start>
<end>
nav:parent.end
</end>
</fragments>
<text>
"{exhibits}{taxon}" ^ args:Microorganism.@path ^ "/~{phenotype}" ^ args:Phenotype.@concept-path ^ "/"
</text>
<arguments>
<taxon>
args:Microorganism.id:unique
</taxon>
<phenotype>
args:Phenotype.id:unique
</phenotype>
</arguments>
</annotations>
<annotations>
<instances>
relations:
PhenotypeRelation.tuples
</instances>
<instances>
relations:
CooccurrenceLocalization.tuples.nav:arguments[@role == "Localization"].sort:nsval(nav:features:concept-path, @value)
</instances>
<fragments>
<instances>
sort:ival(args, start)
</instances>
<instances>
sort:ival(
nav:parent.nav:parent.
args, start)
</instances>
</fragments>
<text>
"{
exhibits}" ^ args:Microorganism.@form ^ "/~" ^ args:Phenotype.@form
^ "/"
</text>
<text>
"{
livesin}{taxon}" ^ nav:parent.nav:parent.args:Bacterium.@path ^ "/~{habitat}" ^ @value
^ "/"
</text>
<arguments>
<taxon>
args:Microorganis
m.id:unique
</taxon>
<
phenotype>
args:Phenotype
.id:unique
</
phenotype
>
<taxon>
nav:parent.nav:parent.args:Bacteriu
m.id:unique
</taxon>
<
habitat>
nav:parent.nav:parent.args:Localization
.id:unique
</
habitat
>
</arguments>
</annotations>
<annotations>
<instances>
relations:
Us
eRelation.tuples
</instances>
<instances>
relations:
Phenotyp
eRelation.tuples
.nav:arguments[@role == "Phenotype"].sort:nsval(nav:features:concept-path, @value)
</instances>
<fragments>
<instances>
sort:ival(args, start)
</instances>
<instances>
sort:ival(
nav:parent.nav:parent.
args, start)
</instances>
</fragments>
<text>
"{
studiedfor
}{taxon}" ^ args:Microorganism.@path ^ "/~{
use}" ^ args:Use.@concept-path
^ "/"
</text>
<text>
"{
exhibits
}{taxon}" ^
nav:parent.nav:parent.
args:Microorganism.@path ^ "/~{
phenotype}" ^ @value
^ "/"
</text>
<arguments>
<taxon>
args:Microorganism.id:unique
</taxon>
<
use>
args:Us
e.id:unique
</
us
e>
<taxon>
nav:parent.nav:parent.
args:Microorganism.id:unique
</taxon>
<
phenotype>
nav:parent.nav:parent.args:Phenotyp
e.id:unique
</
phenotyp
e>
</arguments>
</annotations>
<annotations>
<instances>
relations:UseRelation.tuples
</instances>
<instances>
relations:UseRelation.tuples
.nav:arguments[@role == "Use"].sort:nsval(nav:features:concept-path, @value)
</instances>
<fragments>
<instances>
sort:ival(args, start)
</instances>
<instances>
sort:ival(
nav:parent.nav:parent.
args, start)
</instances>
</fragments>
<text>
"{studiedfor}
" ^
args:Microorganism.@
form
^ "/~
" ^ args:Use.@form
^ "/"
</text>
<text>
"{studiedfor}
{taxon}" ^ nav:parent.nav:parent.
args:Microorganism.@
path
^ "/~
{use}" ^ @value
^ "/"
</text>
<arguments>
<taxon>
args:Microorganism.id:unique
</taxon>
<use>
args:Use.id:unique
</use>
<taxon>
nav:parent.nav:parent.
args:Microorganism.id:unique
</taxon>
<use>
nav:parent.nav:parent.
args:Use.id:unique
</use>
</arguments>
</annotations>
</fields>
<fields>
<instances>
nav:features:mesh-name
</instances>
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