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Created with Raphaël 2.2.012Apr111013Nov10986231Oct3028Sep18151413Jul12117Apr27Mar24Feb2322212013Dec1285Nov27Oct21Sep12Jul58Jun722Apr212019151412876528Mar251Dec22Oct212024Sep20Apr1697531Mar19Feb17161511Aug6543workaround NCBI Taxonomy bugmastermasterrefactored MeSH handling codeupdated microorganisms rootsbetter reportingHandle MeSH treeremove taxpath from roots config filesCandidatus abbreviation (#28)handle rootEPPOEPPOignore all output except EPPO-matchcreated snakefilerefactoradded all-codes.csv, added statistics of unmatched codes by kingdom and phylummatch Genus sp. with Genusupdated outputrenamed fileadded output filesrenamed filedetect abbreviations in EPPO namesadded percents in clique tablefixed markdownupdated countsfixed cliquescleaned clique outputfixed bugfixed bug in disambiguationadded pred parameter to get_alignmentsdiscard disambiguateddocument EPPO matchingupdated to new alignment objectbetter-alignmentbetter-alignmentincorporated EPPO-ambiguous in EPPO-matchreified alignmentcompute cliquesalignment disambiguationadded remove_alignment methodfixed tab in EPPO nameparse EPPO Rankbetter variable namesEPPO ambiguitiesEPPO vs NCBI match scriptadded EPPOParser