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Commit 1eb811b2 authored by Robert Bossy's avatar Robert Bossy
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refactorred reject file

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[0-9/\.\-]+ ### only symbols
[ -@]+
### countries
Argentina
Bulgaria
China
Japan
Mali
Namibia
niger
Panama
Tanzania
Togo
Tonga
turkey
### Common English words
A
AD
AH
Album
all
ALL
AM
AND
AT
BAG
bear
Camera
Cancer
Car
cat
collection
Data
fish
flag
Gas
Hero
Hi
HI
I
Idea
IE
Lap
Major
man
ME
MR
MS
name
none
OR
other
permit
PM
red
root
Sea
Ship
spot
TeSt
This
unknown
white
### Excluded nodes
# root
ncbi:1 ncbi:1
Be ncbi:1587
Bd ncbi:1613 # transposons
unclassified bacterium ncbi:2338
unidentified bacteria ncbi:2338
unidentified bacterium ncbi:2338
unknown bacteria ncbi:2338
ncbi:2387 ncbi:2387
# insertion sequences
ncbi:2673 ncbi:2673
unidentified proteobacterium ncbi:2722
unknown proteobacterium ncbi:2722 # other sequences
rape ncbi:3708 ncbi:28384
Glycine ncbi:3846
rays ncbi:7858 # expression vectors
A hybrid ncbi:8307 ncbi:29278
monitors ncbi:8555
Ara ncbi:9225 # synthetic construct
euro ncbi:9319
man ncbi:9606
bear ncbi:9632
bears ncbi:9632
cat ncbi:9685
pig ncbi:9823
Axis ncbi:9855
Vira ncbi:10239
unidentified poxvirus ncbi:10283
unidentified entomopoxvirus ncbi:10291
ASFV ncbi:10497
degu ncbi:10160
LGT ncbi:11085
LI ncbi:11086
PVA ncbi:12215
GA-1 ncbi:12345
other sequences ncbi:28384
29278
Spea ncbi:30316
A glycine ncbi:307491
ncbi:32630 ncbi:32630
# unidentified
ncbi:32644 ncbi:32644
flag ncbi:34205
plasmids ncbi:36549 # plasmids
hybrid ncbi:37965 ncbi:36549
bacteriophage ncbi:38018
bacteriophages ncbi:38018 # hybrid
unidentified bacteriophage ncbi:38018 ncbi:37965
unidentified phage ncbi:38018
mum ncbi:41568 # cloning vector
Arca ncbi:44596
ncbi:45196 ncbi:45196
ncbi:45197
4ncbi:5328 # shuttle vector
Thymus ncbi:49990 shuttle vector
ncbi:52958
Bacillus ncbi:55087 # expression vector
ncbi:187 ncbi:55511 ncbi:81076
name ncbi:55581
spot ncbi:59837 # human gut metagenome
Laser ncbi:62990 ncbi:408170
Idea ncbi:76236
Codon ncbi:79338
expression vector ncbi:81076 ### Excluded synonyms
unidentified expression vector ncbi:81076 unidentified proteobacterium
Dina ncbi:83994 unknown proteobacterium
gag ncbi:103820 rape
Later ncbi:123504 Glycine
Ada ncbi:125078 ray
Side ncbi:145724 rays
Aa ncbi:152839 BD
tipa ncbi:162890 monitors
This ncbi:169495 Ara
aka ncbi:172644 euro
permit ncbi:173331 bears
Car ncbi:201850 pig
Mene ncbi:206144 Axis
Pero ncbi:214303 Vira
3A ncbi:215167 unidentified poxvirus
Luria ncbi:218032 unidentified entomopoxvirus
Iso ncbi:238707 ASFV
Cis ncbi:245896 degu
ray ncbi:255564 LGT
Pera ncbi:256812 LI
Mops ncbi:258862 PVA
Bias ncbi:272805 GA-1
Sige ncbi:328602 GA 1
Span ncbi:333408 Spea
California ncbi:337343 bacteriophage
teta ncbi:338092 bacteriophages
Circe ncbi:345438 unidentified bacteriophage
Tasa ncbi:381831 unidentified phage
Nusa ncbi:468772 mum
A bacterium ncbi:494443 Arca
--> ncbi:545367 Thymus
phototrophic bacterium
ncbi:55087 Bacillus
Laser
Codon
Dina
gag
Ada
Aa
tipa
aka
Mene
Pero
3A
3a
Luria
Iso
Cis
Pera
Mops
Bias
Sige
California
teta
Circe
Nusa
[A-Z]\. alpha [A-Z]\. alpha
[A-Z]\. beta [A-Z]\. beta
[A-Z]\. gamma [A-Z]\. gamma
[A-Z]\. delta [A-Z]\. delta
[A-Z]\. epsilon [A-Z]\. epsilon
[A-Z]\. group [A-Z]\. group
[A-Z] complex
A hybrid
A glycine
A group A group
A major A major
A minor A minor
...@@ -109,30 +187,54 @@ A minimum ...@@ -109,30 +187,54 @@ A minimum
S medium S medium
A mouse A mouse
A flagellum A flagellum
S complex
Asp
Beta Beta
Helix Helix
rat rat
Tor Tor
Bio ncbi:463801 Chen
Chen ncbi:8842 Dialysis
Color ncbi:8869 Ideas
Dialysis ncbi:124307 Indicator
Ideas ncbi:76236 Phyla
Indicator ncbi:189528
Phyla ncbi:86858
163164
374463
tetra tetra
408170 Tetra
Delta ncbi:998453 Delta
is ncbi:159382 Electron
Are ncbi:695398
Electron ncbi:1118549
environmental samples environmental samples
E ncbi:178505 clinical samples
AND ncbi:1481724
clinical samples ncbi:88229
clinical samples ncbi:191496 ### Obsolete
clinical samples ncbi:226901 # Be ncbi:1587
# Bd ncbi:1613
# unclassified bacterium ncbi:2338
# unidentified bacteria ncbi:2338
# unidentified bacterium ncbi:2338
# unknown bacteria ncbi:2338
# flag ncbi:34205
# ncbi:5328
# 187 ncbi:55511
# name ncbi:55581
# spot ncbi:59837
# Laser ncbi:62990
# Idea ncbi:76236
# Later ncbi:123504
# Side ncbi:145724
# This ncbi:169495
# permit ncbi:173331
# Car ncbi:201850
# Span ncbi:333408
# Tasa ncbi:381831
# Nusa ncbi:468772
# A bacterium ncbi:494443
# --> ncbi:545367
# A group
# Asp
# Bio ncbi:463801
# Color ncbi:8869
# 163164
# 374463
# is ncbi:159382
# Are ncbi:695398
# E ncbi:178505
# AND ncbi:1481724
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