fixed rewrite snakefile top goal

rewrite-taxonomy.snakefile

@@ -4,7 +4,8 @@ configfile: 'config.yaml'
 rule all:
     input:
         config['OUTDIR'] + '/finish.txt',
-        config['OUTDIR'] + '/taxid_microorganisms.txt'
+        config['OUTDIR'] + '/taxid_microorganisms.txt',
+        config['OUTDIR'] + '/taxa+id_microorganisms.txt'
 
 
 rule check:
@@ -39,7 +40,7 @@ rule taxaid_full:
         config['OUTDIR'] + '/' + config['DSMZ_MATCH_DIR']
 
     shell:
-        '''{config[REWRITE_TAXONOMY]} -namesFile {config[OUTDIR]}/{config[NCBI_DIR]}/names.dmp -namesFile {input}/dsmz-names.dmp  -prefix ncbi: -rejectionFile reject.txt -saturationFile saturate.txt -pattern '{{NAME}}\t{{TAXID}}\t{{CANONICAL}}\t{{TAXID_PATH}}\t{{POS_TAG}}\t{{RANK}}\t{{SPECIES_TAXID}}\t{{SPECIES_NAME}}\n' {config[OUTDIR]}/{config[NCBI_DIR]}/nodes.dmp {input}/dsmz-nodes.dmp >{output}'''
+        '''{config[REWRITE_TAXONOMY]} -namesFile {config[OUTDIR]}/{config[NCBI_DIR]}/names.dmp -namesFile {input}/dsmz-names.dmp -prefix ncbi: -rejectionFile reject.txt -saturationFile saturate.txt -pattern '{{NAME}}\t{{TAXID}}\t{{CANONICAL}}\t{{TAXID_PATH}}\t{{POS_TAG}}\t{{RANK}}\t{{SPECIES_TAXID}}\t{{SPECIES_NAME}}\n' {config[OUTDIR]}/{config[NCBI_DIR]}/nodes.dmp {input}/dsmz-nodes.dmp >{output}'''
 
 
 rule taxid_full: