Squashed commit of the following:

commit 4adf37e0
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Mon Sep 2 09:55:02 2024 +0200

    change apk to apt

commit 21282de5
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Mon Sep 2 09:50:49 2024 +0200

    remove bash header

commit 6b045540
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Mon Sep 2 09:48:58 2024 +0200

    change jdk image

commit 66d2a94d
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Mon Sep 2 09:41:58 2024 +0200

    specify bash as shell

commit a4a82682
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Mon Sep 2 09:39:20 2024 +0200

    specify bash as shell

commit 9c7afcbf
Merge: 3510b9bc 95fcc45e
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Mon Sep 2 09:26:16 2024 +0200

    Merge branch 'develop' into hotfix/fixCi20240207

commit 95fcc45e
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Wed Feb 7 16:33:53 2024 +0100

    test ci

commit f271cc1f
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Wed Feb 7 16:28:34 2024 +0100

    Revert "test ci"

    This reverts commit 7e69b9ac.

commit 7e69b9ac
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Wed Feb 7 16:19:05 2024 +0100

    test ci

commit 3510b9bc
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Wed Feb 7 15:58:30 2024 +0100

    test ci

commit 8ece54bb
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Wed Feb 7 12:28:25 2024 +0100

    Add parseGenes option to FBCparser

    The parsing of the gene association is often the most time consuming step of the sbml reading.
    Setting the parseGenes option to false allows not to parse genes when it's not useful

commit f7816b37
Author: cfrainay <clement.frainay@inrae.fr>
Date:   Wed Jan 24 15:08:55 2024 +0100

    handle alternate uri format for refs parsing

commit 027f2556
Merge: 29a8b780 26273101
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Fri Nov 17 09:12:06 2023 +0100

    Merge tag 'changeVersion' into develop

    changeVersion

commit 29a8b780
Merge: 7d119c6d 5367cd4a
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Fri Nov 17 07:58:43 2023 +0100

    Merge tag 'fixDeployCentral2' into develop

    tag fixDeployCentral2

commit 7d119c6d
Merge: 59909c8e ec95dc18
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Thu Nov 16 18:14:37 2023 +0100

    Merge tag 'fixDeployCentral' into develop

    tag fixDeployCentral

commit 59909c8e
Merge: cf23cf5d 971f5bf0
Author: cfrainay <clement.frainay@inrae.fr>
Date:   Fri Nov 10 18:24:26 2023 +0100

    Merge branch 'feature/java11to17' into develop

    upgrade to java 17

commit 971f5bf0
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Fri Nov 10 16:50:52 2023 +0100

    change docker images in CI

commit 72717d77
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Fri Nov 10 16:41:13 2023 +0100

    change docker image in the Docker recipe

commit e29ddfee
Author: lcottret <ludovic.cottret@inrae.fr>
Date:   Fri Nov 10 16:24:14 2023 +0100

    change docker image in the singularity recipe

commit a8c8f63b
Author: cfrainay <clement.frainay@inrae.fr>
Date:   Wed Nov 8 16:08:51 2023 +0100

    I don't know what I'm doing

commit 38c3b160
Author: cfrainay <clement.frainay@inrae.fr>
Date:   Wed Nov 8 11:38:22 2023 +0100

    update pom fix dependencies

commit cf23cf5d
Author: cfrainay <clement.frainay@inrae.fr>
Date:   Wed Jul 26 15:43:46 2023 +0200

    update changelog

commit 73eea80e
Merge: d0cc0a56 52a7f940
Author: cfrainay <clement.frainay@inrae.fr>
Date:   Wed Jul 26 15:42:59 2023 +0200

    Merge branch 'master' into develop

commit d0cc0a56
Merge: 16a82a26 6b7b1ee8
Author: cfrainay <clement.frainay@inrae.fr>
Date:   Wed Jul 26 15:32:36 2023 +0200

    Merge tag '1.5.0' into develop

    release 1.5.0