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Commit e8bd89ee authored by Clement Frainay's avatar Clement Frainay
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Add log4J configuration file

parent d34deeff
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......@@ -26,7 +26,7 @@ import java.util.stream.Collectors;
public class ParseSbml {
private static final Logger logger = LogManager.getLogger(ParseSbml.class.getName());
private static final Logger logger = LogManager.getLogger(ParseSbml.class);
/*
* parse SBML using JSBML library
......
......@@ -23,7 +23,7 @@ import java.util.regex.Pattern;
public class SmilesFromInchiAnnot {
private static final Logger logger = LogManager.getLogger(SmilesFromInchiAnnot.class.getName());
private static final Logger logger = LogManager.getLogger(SmilesFromInchiAnnot.class);
//Our data of interest, molecular structure, can be extracted from InChIs.
//InChIs are molecular descriptor
......
......@@ -20,7 +20,7 @@ import org.sbml.jsbml.Species;
public class Compound{
private static final Logger logger = LogManager.getLogger(Compound.class.getName());
private static final Logger logger = LogManager.getLogger(Compound.class);
private final Species sbmlSpecie;
......
<?xml version="1.0" encoding="UTF-8"?>
<Configuration status="ALL">
<Appenders>
<Console name="Console" target="SYSTEM_OUT">
<PatternLayout pattern="%d{HH:mm} %logger{1} : %highlight{%-5level} - %msg%n" />
</Console>
<File name="GSAMLOG" fileName="gsam.log" immediateFlush="false" append="false">
<PatternLayout pattern="%d{yyy-MM-dd HH:mm} %logger{1}, %-5level - %msg%n"/>
</File>
</Appenders>
<Loggers>
<Logger name="groupId.IsoMet" level="debug" additivity="false">
<AppenderRef ref="GSAMLOG"/>
</Logger>
<Root level="warn">
<AppenderRef ref="Console"/>
</Root>
</Loggers>
</Configuration>
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