Closed
Milestone
Sep 23, 2023–Feb 20, 2024
Meteor 3.4
Meteor 3.4 will include several new catalog, a strain approach and an optimization of the code.
Unstarted Issues (open and unassigned)
0
Ongoing Issues (open and assigned)
0
Completed Issues (closed)
21
- Merging read census stage 1 and 2. Only stage should be read, no more !
- Add module parser unitary tests
- Adapt merging to new profile architecture
- Compute unmapped reads count based on census_stage_1.ini information
- Error: Cannot access the mapping results
- Ini files contains unused information that should be deleted
- Repair taxo catalogue and repush all catalogue with a fasta file
- Simplify functional parameters in meteor profile
- Solve TODO comments in meteor profile
- Determine the minimum bcftool version and implement a check_version
- Add cat catalogue
- Meteor is not building with python3.12
- Test meteor with multiple python version
- Add skin catalog
- Best way to save the alignment ?
- Add dog catalog
- Develop a meteor strain approach
- Add profiler and merger tests
- Correct pylint and mypy errors
- Add info to ini file after meteor mapping
- Check bowtie2 version to avoid issue
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