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metagenopolis
meteor
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42ba2ad1
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42ba2ad1
authored
7 months ago
by
Florian Plaza-Onate
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Update README
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42ba2ad1
WARNING: this is the legacy version of Meteor.
We strongly encourage using the new version of Meteor (aka Meteor 2) available here: https://github.com/metagenopolis/meteor
=======================================================================
Release notes for Meteor Version 3.2.1
=======================================================================
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@@ -27,61 +30,9 @@ In the package, files are organized as follows:
Installation notes for Meteor Version 3.2.1
======================================================================
This file describes the building and installation instructions from the SOURCES for UNIX like systems.
NB: Building and running Meteor on MS Windows system has not been tested,
but should easily be achieved as Meteor uses standard C++ code without any exotic dependencies.
Supported Systems
=================
Will work in most modern GNU/Linux, and macOS (10.5 or later with Intel processor) systems.
Building and running pre-requisite
==================================
1. Compiler collections with c++98 support (e.g. g++ or clang++)
2. Ruby interpreter version 1.9 or later, with "iniparse" rubygem module version 1.5.0 or later
3. bowtie2 version 2.3.5.1 or later, and bowtie 1.2.3 or later if you plan to use color space SOLiD data.
Installation
============
On a GNU/Linux system, we recommand to have g++, make and ruby installed via the package manager of your
distribution.
e.g.:
on Debian/Ubuntu plateforms (as root or sudoer):
apt-get install make g++ ruby
on Redhat/Fedora/CentOS plateforms (as root or sudoer):
yum install make gcc-c++ ruby
- To build Meteor, open a terminal and execute the following commands:
cd meteor-pipeline/src/
make
This will create two binaries (meteor-counter and meteor-profiler) in meteor-pipeline/src/build/
- Now copy the meteor pipeline executables in a folder present in the PATH environment variable.
e.g. as root or sudoer (this will install meteor for all user):
cp build/meteor-counter build/meteor-profiler ../meteor.rb /usr/local/bin
Or as common user (every user of meteor will have to do this):
[ ! -d ~/bin ] && mkdir ~/bin
cp build/meteor-counter build/meteor-profiler ../meteor.rb ~/bin
- Then install the ruby module iniparse (>= 1.5.0).
As root or sudoer:
gem install iniparse
As common user (every user of meteor will have to do this):
gem install iniparse --user-install
Meteor can be installed with conda:
conda create -n meteor_env meteor-legacy -c fplazaonate -c bioconda -c conda-forge
conda activate meteor_env
======================================================================
Usage of Meteor Version 3.2.1
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